miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5107 3' -55.4 NC_001798.1 + 149899 0.76 0.408268
Target:  5'- gAGGA-GGAGGaGGCGGAGGA-GGaGGAGg -3'
miRNA:   3'- -UCCUaCCUUC-CCGUCUUCUaCC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 97530 0.76 0.417055
Target:  5'- gAGGA-GGggGGGCGGAGGcGUGGcgcGGGGa -3'
miRNA:   3'- -UCCUaCCuuCCCGUCUUC-UACC---CCUC- -5'
5107 3' -55.4 NC_001798.1 + 27552 0.76 0.417055
Target:  5'- cGGggGGAGGGGCGGcgcccGcgGGGGAGc -3'
miRNA:   3'- uCCuaCCUUCCCGUCuu---CuaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 85812 0.75 0.425957
Target:  5'- cGGGGgcgaugacggGGggGGGCGGggGcgGGcGGGGg -3'
miRNA:   3'- -UCCUa---------CCuuCCCGUCuuCuaCC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 4282 0.75 0.425957
Target:  5'- gAGGA-GGAGGaGGCGGAGGAggaGGcGGAGg -3'
miRNA:   3'- -UCCUaCCUUC-CCGUCUUCUa--CC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 95769 0.75 0.453323
Target:  5'- aAGGAccugacguUGGAuaugcucuaGGGGCGGggG-UGGGGGGg -3'
miRNA:   3'- -UCCU--------ACCU---------UCCCGUCuuCuACCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 34619 0.75 0.462655
Target:  5'- aAGGgcGGcGGcGGCGGggGggGGGGGGg -3'
miRNA:   3'- -UCCuaCCuUC-CCGUCuuCuaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 147621 0.75 0.470194
Target:  5'- gAGGggGGggGGGCgggcggaagagAGAAGAgagcagggguugGGGGAGa -3'
miRNA:   3'- -UCCuaCCuuCCCG-----------UCUUCUa-----------CCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 11150 0.74 0.491239
Target:  5'- gGGGggGGggGGGgGGAAauaaccacGAUGGGGGc -3'
miRNA:   3'- -UCCuaCCuuCCCgUCUU--------CUACCCCUc -5'
5107 3' -55.4 NC_001798.1 + 32937 0.74 0.510741
Target:  5'- gAGGAgacaGGAagugGGGGUGGGAG-UGGGGGGg -3'
miRNA:   3'- -UCCUa---CCU----UCCCGUCUUCuACCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 111646 0.74 0.530558
Target:  5'- cGGGGgcgcucggcGGggGGGCGGAAGAgacgcucGGGGAc -3'
miRNA:   3'- -UCCUa--------CCuuCCCGUCUUCUa------CCCCUc -5'
5107 3' -55.4 NC_001798.1 + 6577 0.74 0.530558
Target:  5'- cGGggGGAcGGGCcgGGggGAcGGGGGGa -3'
miRNA:   3'- uCCuaCCUuCCCG--UCuuCUaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 6535 0.74 0.530558
Target:  5'- cGGggGGAcGGGCcgGGggGAcGGGGGGa -3'
miRNA:   3'- uCCuaCCUuCCCG--UCuuCUaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 101873 0.73 0.540572
Target:  5'- gGGGGUGGGcgugugcgggggAGGGCuGAuguAGcgGGGGAGc -3'
miRNA:   3'- -UCCUACCU------------UCCCGuCU---UCuaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 88034 0.73 0.540572
Target:  5'- uGGccgGGGAGGGCAGGGccGcUGGGGGGg -3'
miRNA:   3'- uCCua-CCUUCCCGUCUU--CuACCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 10300 0.73 0.540572
Target:  5'- cGGggGGAcgacGGGGgGGggGuUGGGGGGg -3'
miRNA:   3'- uCCuaCCU----UCCCgUCuuCuACCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 107395 0.73 0.540572
Target:  5'- cGGcgGGAGGuGGCGGGAGGacUGGGGc- -3'
miRNA:   3'- uCCuaCCUUC-CCGUCUUCU--ACCCCuc -5'
5107 3' -55.4 NC_001798.1 + 146305 0.73 0.560782
Target:  5'- uGGgcGGccGGGCgGGAGGAUGGcGGAGa -3'
miRNA:   3'- uCCuaCCuuCCCG-UCUUCUACC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 95945 0.73 0.571987
Target:  5'- gGGGA-GGggGGGguGAGGAagaaagaacggauucGGGGGGg -3'
miRNA:   3'- -UCCUaCCuuCCCguCUUCUa--------------CCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 136642 0.73 0.581194
Target:  5'- cGGGGUGGcgcaaaacAGGGCcgAGAGGAcGGGGGGc -3'
miRNA:   3'- -UCCUACCu-------UCCCG--UCUUCUaCCCCUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.