miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5107 3' -55.4 NC_001798.1 + 11666 0.67 0.882346
Target:  5'- gGGGGUcGGGucucGGGgGGAGGAcGGGGGu -3'
miRNA:   3'- -UCCUA-CCUu---CCCgUCUUCUaCCCCUc -5'
5107 3' -55.4 NC_001798.1 + 43962 0.67 0.875154
Target:  5'- gAGGGUGucGGGGCGuGGGucGUGGGGGa -3'
miRNA:   3'- -UCCUACcuUCCCGUcUUC--UACCCCUc -5'
5107 3' -55.4 NC_001798.1 + 36703 0.67 0.875154
Target:  5'- ----gGGGAGGGgAGGAcGcgGGGGAGc -3'
miRNA:   3'- uccuaCCUUCCCgUCUU-CuaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 64055 0.67 0.867741
Target:  5'- cGGGGcacUGGGAGGuGUAGAaguaccgcucggGGGUGGGGc- -3'
miRNA:   3'- -UCCU---ACCUUCC-CGUCU------------UCUACCCCuc -5'
5107 3' -55.4 NC_001798.1 + 27227 0.67 0.867741
Target:  5'- nGGcgcGGggGaGGCGGccGcgGGGGAGg -3'
miRNA:   3'- uCCua-CCuuC-CCGUCuuCuaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 26524 0.67 0.860112
Target:  5'- cGGcgGGcGGcGGCGuGGAGGUGGuGGGGa -3'
miRNA:   3'- uCCuaCCuUC-CCGU-CUUCUACC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 6271 0.68 0.852272
Target:  5'- cGGggGGAcGGGCcgGGggGAcgggccGGGGGGa -3'
miRNA:   3'- uCCuaCCUuCCCG--UCuuCUa-----CCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 102475 0.68 0.810163
Target:  5'- uGGGcgGGAGGaGGCGGGuAGugcGGGGAc -3'
miRNA:   3'- -UCCuaCCUUC-CCGUCU-UCua-CCCCUc -5'
5107 3' -55.4 NC_001798.1 + 57515 0.68 0.835988
Target:  5'- cGGGGuUGGggGGGCguGGGuguGGUucGGGGGGc -3'
miRNA:   3'- -UCCU-ACCuuCCCG--UCUu--CUA--CCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 145837 0.68 0.835988
Target:  5'- cGGGGUGGGAGuGGU----GGUGGGGGa -3'
miRNA:   3'- -UCCUACCUUC-CCGucuuCUACCCCUc -5'
5107 3' -55.4 NC_001798.1 + 148267 0.68 0.835988
Target:  5'- cAGGGUaaGGAGGGGCGGgcG-UGGcGGGc -3'
miRNA:   3'- -UCCUA--CCUUCCCGUCuuCuACC-CCUc -5'
5107 3' -55.4 NC_001798.1 + 56188 0.68 0.844228
Target:  5'- gGGGGUGGGGuGGGguGugguGGGUacgGGGGAc -3'
miRNA:   3'- -UCCUACCUU-CCCguCu---UCUA---CCCCUc -5'
5107 3' -55.4 NC_001798.1 + 14990 0.68 0.852272
Target:  5'- uGGgcGGggGGGC-GAGGcguguUGGGGGc -3'
miRNA:   3'- uCCuaCCuuCCCGuCUUCu----ACCCCUc -5'
5107 3' -55.4 NC_001798.1 + 6310 0.68 0.852272
Target:  5'- cGGggGGAcGGGCcgGGggGAcgggccGGGGGGa -3'
miRNA:   3'- uCCuaCCUuCCCG--UCuuCUa-----CCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 148374 0.68 0.835988
Target:  5'- cAGGGUgaGGAGGGGCGGgcG-UGGcGGGc -3'
miRNA:   3'- -UCCUA--CCUUCCCGUCuuCuACC-CCUc -5'
5107 3' -55.4 NC_001798.1 + 27002 0.69 0.763945
Target:  5'- gGGGGUcGGgcGGGCGGggGucgggcgGGcGGGGg -3'
miRNA:   3'- -UCCUA-CCuuCCCGUCuuCua-----CC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 26957 0.69 0.763945
Target:  5'- gGGGGUcGGgcGGGCGGggGucgggcgGGcGGGGg -3'
miRNA:   3'- -UCCUA-CCuuCCCGUCuuCua-----CC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 26898 0.69 0.763945
Target:  5'- gGGGGUcGGgcGGGCGGggGucgggcgGGcGGGGg -3'
miRNA:   3'- -UCCUA-CCuuCCCGUCuuCua-----CC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 26853 0.69 0.763945
Target:  5'- gGGGGUcGGgcGGGCGGggGucgggcgGGcGGGGg -3'
miRNA:   3'- -UCCUA-CCuuCCCGUCuuCua-----CC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 26808 0.69 0.763945
Target:  5'- gGGGGUcGGgcGGGCGGggGucgggcgGGcGGGGg -3'
miRNA:   3'- -UCCUA-CCuuCCCGUCuuCua-----CC-CCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.