miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5107 3' -55.4 NC_001798.1 + 11666 0.67 0.882346
Target:  5'- gGGGGUcGGGucucGGGgGGAGGAcGGGGGu -3'
miRNA:   3'- -UCCUA-CCUu---CCCgUCUUCUaCCCCUc -5'
5107 3' -55.4 NC_001798.1 + 146095 0.67 0.882346
Target:  5'- gAGGcgGGc-GGGCGaAGGAaGGGGGGg -3'
miRNA:   3'- -UCCuaCCuuCCCGUcUUCUaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 6611 0.67 0.882346
Target:  5'- cGGggGGAcGGGgGGAcgGGccGGGGGGa -3'
miRNA:   3'- uCCuaCCUuCCCgUCU--UCuaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 54926 0.67 0.882346
Target:  5'- ----cGGu-GGGC-GAGGAUGGGGGGc -3'
miRNA:   3'- uccuaCCuuCCCGuCUUCUACCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 29908 0.67 0.88931
Target:  5'- gGGGGUGGucgcGGGCGGuGGGcucGGGGGc -3'
miRNA:   3'- -UCCUACCuu--CCCGUCuUCUa--CCCCUc -5'
5107 3' -55.4 NC_001798.1 + 61152 0.67 0.88931
Target:  5'- gAGGGcucggGGGAGGG-GGAGGG-GGGGAa -3'
miRNA:   3'- -UCCUa----CCUUCCCgUCUUCUaCCCCUc -5'
5107 3' -55.4 NC_001798.1 + 102475 0.68 0.810163
Target:  5'- uGGGcgGGAGGaGGCGGGuAGugcGGGGAc -3'
miRNA:   3'- -UCCuaCCUUC-CCGUCU-UCua-CCCCUc -5'
5107 3' -55.4 NC_001798.1 + 57515 0.68 0.835988
Target:  5'- cGGGGuUGGggGGGCguGGGuguGGUucGGGGGGc -3'
miRNA:   3'- -UCCU-ACCuuCCCG--UCUu--CUA--CCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 145837 0.68 0.835988
Target:  5'- cGGGGUGGGAGuGGU----GGUGGGGGa -3'
miRNA:   3'- -UCCUACCUUC-CCGucuuCUACCCCUc -5'
5107 3' -55.4 NC_001798.1 + 148267 0.68 0.835988
Target:  5'- cAGGGUaaGGAGGGGCGGgcG-UGGcGGGc -3'
miRNA:   3'- -UCCUA--CCUUCCCGUCuuCuACC-CCUc -5'
5107 3' -55.4 NC_001798.1 + 148374 0.68 0.835988
Target:  5'- cAGGGUgaGGAGGGGCGGgcG-UGGcGGGc -3'
miRNA:   3'- -UCCUA--CCUUCCCGUCuuCuACC-CCUc -5'
5107 3' -55.4 NC_001798.1 + 56188 0.68 0.844228
Target:  5'- gGGGGUGGGGuGGGguGugguGGGUacgGGGGAc -3'
miRNA:   3'- -UCCUACCUU-CCCguCu---UCUA---CCCCUc -5'
5107 3' -55.4 NC_001798.1 + 6271 0.68 0.852272
Target:  5'- cGGggGGAcGGGCcgGGggGAcgggccGGGGGGa -3'
miRNA:   3'- uCCuaCCUuCCCG--UCuuCUa-----CCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 6310 0.68 0.852272
Target:  5'- cGGggGGAcGGGCcgGGggGAcgggccGGGGGGa -3'
miRNA:   3'- uCCuaCCUuCCCG--UCuuCUa-----CCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 14990 0.68 0.852272
Target:  5'- uGGgcGGggGGGC-GAGGcguguUGGGGGc -3'
miRNA:   3'- uCCuaCCuuCCCGuCUUCu----ACCCCUc -5'
5107 3' -55.4 NC_001798.1 + 2558 0.69 0.773465
Target:  5'- -cGcgGGAGGGGCGGccgcGGGgcGGGGGGc -3'
miRNA:   3'- ucCuaCCUUCCCGUC----UUCuaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 11352 0.69 0.782856
Target:  5'- cGGGGuuUGGggGGGguGuuuGGGUGGGa-- -3'
miRNA:   3'- -UCCU--ACCuuCCCguCu--UCUACCCcuc -5'
5107 3' -55.4 NC_001798.1 + 36145 0.69 0.782856
Target:  5'- -cGGUGGGgcgcGGcGGCGGucgGGGUGGGGGGa -3'
miRNA:   3'- ucCUACCU----UC-CCGUCu--UCUACCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 44843 0.69 0.792108
Target:  5'- ----cGGAGGGGguGggG-UGGGGGa -3'
miRNA:   3'- uccuaCCUUCCCguCuuCuACCCCUc -5'
5107 3' -55.4 NC_001798.1 + 101947 0.69 0.772518
Target:  5'- gAGGGUGGggGGaccGCcccggauAGAGGAggccccGGGGGGg -3'
miRNA:   3'- -UCCUACCuuCC---CG-------UCUUCUa-----CCCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.