Results 21 - 40 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5107 | 3' | -55.4 | NC_001798.1 | + | 149899 | 0.76 | 0.408268 |
Target: 5'- gAGGA-GGAGGaGGCGGAGGA-GGaGGAGg -3' miRNA: 3'- -UCCUaCCUUC-CCGUCUUCUaCC-CCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 27552 | 0.76 | 0.417055 |
Target: 5'- cGGggGGAGGGGCGGcgcccGcgGGGGAGc -3' miRNA: 3'- uCCuaCCUUCCCGUCuu---CuaCCCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 97530 | 0.76 | 0.417055 |
Target: 5'- gAGGA-GGggGGGCGGAGGcGUGGcgcGGGGa -3' miRNA: 3'- -UCCUaCCuuCCCGUCUUC-UACC---CCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 4282 | 0.75 | 0.425957 |
Target: 5'- gAGGA-GGAGGaGGCGGAGGAggaGGcGGAGg -3' miRNA: 3'- -UCCUaCCUUC-CCGUCUUCUa--CC-CCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 85812 | 0.75 | 0.425957 |
Target: 5'- cGGGGgcgaugacggGGggGGGCGGggGcgGGcGGGGg -3' miRNA: 3'- -UCCUa---------CCuuCCCGUCuuCuaCC-CCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 95769 | 0.75 | 0.453323 |
Target: 5'- aAGGAccugacguUGGAuaugcucuaGGGGCGGggG-UGGGGGGg -3' miRNA: 3'- -UCCU--------ACCU---------UCCCGUCuuCuACCCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 34619 | 0.75 | 0.462655 |
Target: 5'- aAGGgcGGcGGcGGCGGggGggGGGGGGg -3' miRNA: 3'- -UCCuaCCuUC-CCGUCuuCuaCCCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 147621 | 0.75 | 0.470194 |
Target: 5'- gAGGggGGggGGGCgggcggaagagAGAAGAgagcagggguugGGGGAGa -3' miRNA: 3'- -UCCuaCCuuCCCG-----------UCUUCUa-----------CCCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 32937 | 0.74 | 0.510741 |
Target: 5'- gAGGAgacaGGAagugGGGGUGGGAG-UGGGGGGg -3' miRNA: 3'- -UCCUa---CCU----UCCCGUCUUCuACCCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 111646 | 0.74 | 0.530558 |
Target: 5'- cGGGGgcgcucggcGGggGGGCGGAAGAgacgcucGGGGAc -3' miRNA: 3'- -UCCUa--------CCuuCCCGUCUUCUa------CCCCUc -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 6577 | 0.74 | 0.530558 |
Target: 5'- cGGggGGAcGGGCcgGGggGAcGGGGGGa -3' miRNA: 3'- uCCuaCCUuCCCG--UCuuCUaCCCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 6535 | 0.74 | 0.530558 |
Target: 5'- cGGggGGAcGGGCcgGGggGAcGGGGGGa -3' miRNA: 3'- uCCuaCCUuCCCG--UCuuCUaCCCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 11150 | 0.74 | 0.491239 |
Target: 5'- gGGGggGGggGGGgGGAAauaaccacGAUGGGGGc -3' miRNA: 3'- -UCCuaCCuuCCCgUCUU--------CUACCCCUc -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 107395 | 0.73 | 0.540572 |
Target: 5'- cGGcgGGAGGuGGCGGGAGGacUGGGGc- -3' miRNA: 3'- uCCuaCCUUC-CCGUCUUCU--ACCCCuc -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 136642 | 0.73 | 0.581194 |
Target: 5'- cGGGGUGGcgcaaaacAGGGCcgAGAGGAcGGGGGGc -3' miRNA: 3'- -UCCUACCu-------UCCCG--UCUUCUaCCCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 95945 | 0.73 | 0.571987 |
Target: 5'- gGGGA-GGggGGGguGAGGAagaaagaacggauucGGGGGGg -3' miRNA: 3'- -UCCUaCCuuCCCguCUUCUa--------------CCCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 146305 | 0.73 | 0.560782 |
Target: 5'- uGGgcGGccGGGCgGGAGGAUGGcGGAGa -3' miRNA: 3'- uCCuaCCuuCCCG-UCUUCUACC-CCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 101873 | 0.73 | 0.540572 |
Target: 5'- gGGGGUGGGcgugugcgggggAGGGCuGAuguAGcgGGGGAGc -3' miRNA: 3'- -UCCUACCU------------UCCCGuCU---UCuaCCCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 88034 | 0.73 | 0.540572 |
Target: 5'- uGGccgGGGAGGGCAGGGccGcUGGGGGGg -3' miRNA: 3'- uCCua-CCUUCCCGUCUU--CuACCCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 10300 | 0.73 | 0.540572 |
Target: 5'- cGGggGGAcgacGGGGgGGggGuUGGGGGGg -3' miRNA: 3'- uCCuaCCU----UCCCgUCuuCuACCCCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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