miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5107 3' -55.4 NC_001798.1 + 14310 0.66 0.896043
Target:  5'- cGGAUGaGuGGGGGguGc--GUGGGGAGg -3'
miRNA:   3'- uCCUAC-C-UUCCCguCuucUACCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 14990 0.68 0.852272
Target:  5'- uGGgcGGggGGGC-GAGGcguguUGGGGGc -3'
miRNA:   3'- uCCuaCCuuCCCGuCUUCu----ACCCCUc -5'
5107 3' -55.4 NC_001798.1 + 15053 0.69 0.772518
Target:  5'- cGGAUGGGcccGGGGCgcgcGGggGGUGGuuuguugggguucGGAGu -3'
miRNA:   3'- uCCUACCU---UCCCG----UCuuCUACC-------------CCUC- -5'
5107 3' -55.4 NC_001798.1 + 15191 0.82 0.17362
Target:  5'- gGGGGUGGggGGGCuGgcGAgccggGGGGAGc -3'
miRNA:   3'- -UCCUACCuuCCCGuCuuCUa----CCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 15484 0.7 0.734706
Target:  5'- cGGGggGGucguGGGGGCuGGuguGGUGGGGGGc -3'
miRNA:   3'- -UCCuaCC----UUCCCGuCUu--CUACCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 18231 0.71 0.653424
Target:  5'- uGGGcgGGAAGGGUGGAuGGUuuccGGGGGc -3'
miRNA:   3'- -UCCuaCCUUCCCGUCUuCUA----CCCCUc -5'
5107 3' -55.4 NC_001798.1 + 19774 0.7 0.754305
Target:  5'- aGGGAU--AGGGGCAGgcGgcGGGGAa -3'
miRNA:   3'- -UCCUAccUUCCCGUCuuCuaCCCCUc -5'
5107 3' -55.4 NC_001798.1 + 21554 0.82 0.187372
Target:  5'- cAGGGUGGggGGGgGGggG--GGGGAGg -3'
miRNA:   3'- -UCCUACCuuCCCgUCuuCuaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 26524 0.67 0.860112
Target:  5'- cGGcgGGcGGcGGCGuGGAGGUGGuGGGGa -3'
miRNA:   3'- uCCuaCCuUC-CCGU-CUUCUACC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 26662 0.85 0.114512
Target:  5'- cGGGAgcggGGGAGGG-GGGAGAUGGGGAGa -3'
miRNA:   3'- -UCCUa---CCUUCCCgUCUUCUACCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 26808 0.69 0.763945
Target:  5'- gGGGGUcGGgcGGGCGGggGucgggcgGGcGGGGg -3'
miRNA:   3'- -UCCUA-CCuuCCCGUCuuCua-----CC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 26853 0.69 0.763945
Target:  5'- gGGGGUcGGgcGGGCGGggGucgggcgGGcGGGGg -3'
miRNA:   3'- -UCCUA-CCuuCCCGUCuuCua-----CC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 26898 0.69 0.763945
Target:  5'- gGGGGUcGGgcGGGCGGggGucgggcgGGcGGGGg -3'
miRNA:   3'- -UCCUA-CCuuCCCGUCuuCua-----CC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 26957 0.69 0.763945
Target:  5'- gGGGGUcGGgcGGGCGGggGucgggcgGGcGGGGg -3'
miRNA:   3'- -UCCUA-CCuuCCCGUCuuCua-----CC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 27002 0.69 0.763945
Target:  5'- gGGGGUcGGgcGGGCGGggGucgggcgGGcGGGGg -3'
miRNA:   3'- -UCCUA-CCuuCCCGUCuuCua-----CC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 27195 0.76 0.399598
Target:  5'- cGGggGGAGGGGCGGggGAagcccccgGGGcGGGg -3'
miRNA:   3'- uCCuaCCUUCCCGUCuuCUa-------CCC-CUC- -5'
5107 3' -55.4 NC_001798.1 + 27227 0.67 0.867741
Target:  5'- nGGcgcGGggGaGGCGGccGcgGGGGAGg -3'
miRNA:   3'- uCCua-CCuuC-CCGUCuuCuaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 27313 0.83 0.152693
Target:  5'- cGGGAUGGAGGGGagggAGggGGUGGcGGGGa -3'
miRNA:   3'- -UCCUACCUUCCCg---UCuuCUACC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 27552 0.76 0.417055
Target:  5'- cGGggGGAGGGGCGGcgcccGcgGGGGAGc -3'
miRNA:   3'- uCCuaCCUUCCCGUCuu---CuaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 29908 0.67 0.88931
Target:  5'- gGGGGUGGucgcGGGCGGuGGGcucGGGGGc -3'
miRNA:   3'- -UCCUACCuu--CCCGUCuUCUa--CCCCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.