miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5107 3' -55.4 NC_001798.1 + 137465 0.66 0.902542
Target:  5'- ----cGGAAaucGGCGGggGuUGGGGAGg -3'
miRNA:   3'- uccuaCCUUc--CCGUCuuCuACCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 136642 0.73 0.581194
Target:  5'- cGGGGUGGcgcaaaacAGGGCcgAGAGGAcGGGGGGc -3'
miRNA:   3'- -UCCUACCu-------UCCCG--UCUUCUaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 129870 0.7 0.748469
Target:  5'- gAGGAgGGggGuGGUGGccgaaagaaaaggaaGGGGUGGGGGGa -3'
miRNA:   3'- -UCCUaCCuuC-CCGUC---------------UUCUACCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 125661 0.66 0.920598
Target:  5'- gAGGcgGGGGcGGCuGAGGucaGGGGGGu -3'
miRNA:   3'- -UCCuaCCUUcCCGuCUUCua-CCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 121720 0.66 0.924497
Target:  5'- -cGAcGGAGGcGGCGGcccaccugucccugGGGAUGGGGAa -3'
miRNA:   3'- ucCUaCCUUC-CCGUC--------------UUCUACCCCUc -5'
5107 3' -55.4 NC_001798.1 + 112474 0.7 0.724765
Target:  5'- uGGGGUGGu-GGGaGGAGGGUGguGGGAGc -3'
miRNA:   3'- -UCCUACCuuCCCgUCUUCUAC--CCCUC- -5'
5107 3' -55.4 NC_001798.1 + 111646 0.74 0.530558
Target:  5'- cGGGGgcgcucggcGGggGGGCGGAAGAgacgcucGGGGAc -3'
miRNA:   3'- -UCCUa--------CCuuCCCGUCUUCUa------CCCCUc -5'
5107 3' -55.4 NC_001798.1 + 107395 0.73 0.540572
Target:  5'- cGGcgGGAGGuGGCGGGAGGacUGGGGc- -3'
miRNA:   3'- uCCuaCCUUC-CCGUCUUCU--ACCCCuc -5'
5107 3' -55.4 NC_001798.1 + 105804 0.72 0.622409
Target:  5'- gAGGAUGcuuGGcCAGAAGcgGGGGAGg -3'
miRNA:   3'- -UCCUACcuuCCcGUCUUCuaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 103645 0.72 0.643091
Target:  5'- aGGGggGGggGGGUGGAAGcgGgcaaGGGAa -3'
miRNA:   3'- -UCCuaCCuuCCCGUCUUCuaC----CCCUc -5'
5107 3' -55.4 NC_001798.1 + 102475 0.68 0.810163
Target:  5'- uGGGcgGGAGGaGGCGGGuAGugcGGGGAc -3'
miRNA:   3'- -UCCuaCCUUC-CCGUCU-UCua-CCCCUc -5'
5107 3' -55.4 NC_001798.1 + 102031 0.77 0.357256
Target:  5'- cGGGGUGGuuGGGCGGggGucuccgugucugcGUGGGGGu -3'
miRNA:   3'- -UCCUACCuuCCCGUCuuC-------------UACCCCUc -5'
5107 3' -55.4 NC_001798.1 + 101947 0.69 0.772518
Target:  5'- gAGGGUGGggGGaccGCcccggauAGAGGAggccccGGGGGGg -3'
miRNA:   3'- -UCCUACCuuCC---CG-------UCUUCUa-----CCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 101873 0.73 0.540572
Target:  5'- gGGGGUGGGcgugugcgggggAGGGCuGAuguAGcgGGGGAGc -3'
miRNA:   3'- -UCCUACCU------------UCCCGuCU---UCuaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 101004 0.72 0.612074
Target:  5'- gGGGA-GGAAGGcGCGGAGGggGGcGGGu -3'
miRNA:   3'- -UCCUaCCUUCC-CGUCUUCuaCC-CCUc -5'
5107 3' -55.4 NC_001798.1 + 97530 0.76 0.417055
Target:  5'- gAGGA-GGggGGGCGGAGGcGUGGcgcGGGGa -3'
miRNA:   3'- -UCCUaCCuuCCCGUCUUC-UACC---CCUC- -5'
5107 3' -55.4 NC_001798.1 + 96033 0.66 0.902542
Target:  5'- cGGGgcGGgcGGGCGGGcgacgggcauaaAGA-GGGGAu -3'
miRNA:   3'- -UCCuaCCuuCCCGUCU------------UCUaCCCCUc -5'
5107 3' -55.4 NC_001798.1 + 95945 0.73 0.571987
Target:  5'- gGGGA-GGggGGGguGAGGAagaaagaacggauucGGGGGGg -3'
miRNA:   3'- -UCCUaCCuuCCCguCUUCUa--------------CCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 95769 0.75 0.453323
Target:  5'- aAGGAccugacguUGGAuaugcucuaGGGGCGGggG-UGGGGGGg -3'
miRNA:   3'- -UCCU--------ACCU---------UCCCGUCuuCuACCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 88034 0.73 0.540572
Target:  5'- uGGccgGGGAGGGCAGGGccGcUGGGGGGg -3'
miRNA:   3'- uCCua-CCUUCCCGUCUU--CuACCCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.