miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5107 3' -55.4 NC_001798.1 + 23 0.66 0.920598
Target:  5'- gGGGAgucaacccccGGggGGGguGuuuuuUGGGGGGg -3'
miRNA:   3'- -UCCUa---------CCuuCCCguCuucu-ACCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 2558 0.69 0.773465
Target:  5'- -cGcgGGAGGGGCGGccgcGGGgcGGGGGGc -3'
miRNA:   3'- ucCuaCCUUCCCGUC----UUCuaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 4282 0.75 0.425957
Target:  5'- gAGGA-GGAGGaGGCGGAGGAggaGGcGGAGg -3'
miRNA:   3'- -UCCUaCCUUC-CCGUCUUCUa--CC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 6239 0.81 0.207195
Target:  5'- cGGggGGAcGGGCGGggGAcGGGGGGa -3'
miRNA:   3'- uCCuaCCUuCCCGUCuuCUaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 6271 0.68 0.852272
Target:  5'- cGGggGGAcGGGCcgGGggGAcgggccGGGGGGa -3'
miRNA:   3'- uCCuaCCUuCCCG--UCuuCUa-----CCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 6310 0.68 0.852272
Target:  5'- cGGggGGAcGGGCcgGGggGAcgggccGGGGGGa -3'
miRNA:   3'- uCCuaCCUuCCCG--UCuuCUa-----CCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 6362 0.7 0.734706
Target:  5'- cGGggGGAcGGGCcgGGggGccGGGGGGc -3'
miRNA:   3'- uCCuaCCUuCCCG--UCuuCuaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 6393 0.72 0.63275
Target:  5'- gGGGGccGggGGGCcgGGggGAcGGGGGGa -3'
miRNA:   3'- -UCCUacCuuCCCG--UCuuCUaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 6426 0.7 0.724765
Target:  5'- gGGGAcGGggGGaCGGggGGacGGGGGGa -3'
miRNA:   3'- -UCCUaCCuuCCcGUCuuCUa-CCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 6458 0.7 0.724765
Target:  5'- gGGGAcGGggGGaCGGggGGacGGGGGGa -3'
miRNA:   3'- -UCCUaCCuuCCcGUCuuCUa-CCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 6490 0.7 0.724765
Target:  5'- gGGGAcGGggGGaCGGggGGacGGGGGGa -3'
miRNA:   3'- -UCCUaCCuuCCcGUCuuCUa-CCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 6535 0.74 0.530558
Target:  5'- cGGggGGAcGGGCcgGGggGAcGGGGGGa -3'
miRNA:   3'- uCCuaCCUuCCCG--UCuuCUaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 6577 0.74 0.530558
Target:  5'- cGGggGGAcGGGCcgGGggGAcGGGGGGa -3'
miRNA:   3'- uCCuaCCUuCCCG--UCuuCUaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 6611 0.67 0.882346
Target:  5'- cGGggGGAcGGGgGGAcgGGccGGGGGGa -3'
miRNA:   3'- uCCuaCCUuCCCgUCU--UCuaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 8884 0.71 0.674028
Target:  5'- aAGGGcgcUGGcgGAGGGCGGAggcgaAGGUGGGGu- -3'
miRNA:   3'- -UCCU---ACC--UUCCCGUCU-----UCUACCCCuc -5'
5107 3' -55.4 NC_001798.1 + 9660 0.69 0.792108
Target:  5'- cGGGccgcgcGcGGAGGGCGcGGGAUGGGGGGc -3'
miRNA:   3'- -UCCua----C-CUUCCCGUcUUCUACCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 10300 0.73 0.540572
Target:  5'- cGGggGGAcgacGGGGgGGggGuUGGGGGGg -3'
miRNA:   3'- uCCuaCCU----UCCCgUCuuCuACCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 11150 0.74 0.491239
Target:  5'- gGGGggGGggGGGgGGAAauaaccacGAUGGGGGc -3'
miRNA:   3'- -UCCuaCCuuCCCgUCUU--------CUACCCCUc -5'
5107 3' -55.4 NC_001798.1 + 11352 0.69 0.782856
Target:  5'- cGGGGuuUGGggGGGguGuuuGGGUGGGa-- -3'
miRNA:   3'- -UCCU--ACCuuCCCguCu--UCUACCCcuc -5'
5107 3' -55.4 NC_001798.1 + 11666 0.67 0.882346
Target:  5'- gGGGGUcGGGucucGGGgGGAGGAcGGGGGu -3'
miRNA:   3'- -UCCUA-CCUu---CCCgUCUUCUaCCCCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.