Results 1 - 20 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5107 | 3' | -55.4 | NC_001798.1 | + | 146154 | 1.08 | 0.003322 |
Target: 5'- gAGGAUGGAAGGGCAGAAGAUGGGGAGu -3' miRNA: 3'- -UCCUACCUUCCCGUCUUCUACCCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 48590 | 0.87 | 0.092553 |
Target: 5'- gGGGcgGGAGGGGCGGGAGggGcGGGAGg -3' miRNA: 3'- -UCCuaCCUUCCCGUCUUCuaC-CCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 48536 | 0.87 | 0.092553 |
Target: 5'- gGGGcgGGAGGGGCGGGAGggGcGGGAGg -3' miRNA: 3'- -UCCuaCCUUCCCGUCUUCuaC-CCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 48563 | 0.87 | 0.092553 |
Target: 5'- gGGGcgGGAGGGGCGGGAGggGcGGGAGg -3' miRNA: 3'- -UCCuaCCUUCCCGUCUUCuaC-CCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 48617 | 0.87 | 0.092553 |
Target: 5'- gGGGcgGGAGGGGCGGGAGggGcGGGAGg -3' miRNA: 3'- -UCCuaCCUUCCCGUCUUCuaC-CCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 26662 | 0.85 | 0.114512 |
Target: 5'- cGGGAgcggGGGAGGG-GGGAGAUGGGGAGa -3' miRNA: 3'- -UCCUa---CCUUCCCgUCUUCUACCCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 27313 | 0.83 | 0.152693 |
Target: 5'- cGGGAUGGAGGGGagggAGggGGUGGcGGGGa -3' miRNA: 3'- -UCCUACCUUCCCg---UCuuCUACC-CCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 33154 | 0.83 | 0.164958 |
Target: 5'- gGGGAUGGggGGGaagggaGGAGGAggaGGGGGGg -3' miRNA: 3'- -UCCUACCuuCCCg-----UCUUCUa--CCCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 15191 | 0.82 | 0.17362 |
Target: 5'- gGGGGUGGggGGGCuGgcGAgccggGGGGAGc -3' miRNA: 3'- -UCCUACCuuCCCGuCuuCUa----CCCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 21554 | 0.82 | 0.187372 |
Target: 5'- cAGGGUGGggGGGgGGggG--GGGGAGg -3' miRNA: 3'- -UCCUACCuuCCCgUCuuCuaCCCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 6239 | 0.81 | 0.207195 |
Target: 5'- cGGggGGAcGGGCGGggGAcGGGGGGa -3' miRNA: 3'- uCCuaCCUuCCCGUCuuCUaCCCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 69650 | 0.8 | 0.240307 |
Target: 5'- uGGG-GGggGGuGguGGAGGUGGGGAGg -3' miRNA: 3'- uCCUaCCuuCC-CguCUUCUACCCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 153619 | 0.79 | 0.291185 |
Target: 5'- gGGGGUcGGAGGGGCgucAGggGGUcggaGGGGAGg -3' miRNA: 3'- -UCCUA-CCUUCCCG---UCuuCUA----CCCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 34184 | 0.79 | 0.291185 |
Target: 5'- uGGGUGGAAGGGaagaggaAGGAGAaagGGGGGGu -3' miRNA: 3'- uCCUACCUUCCCg------UCUUCUa--CCCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 36089 | 0.78 | 0.298107 |
Target: 5'- uAGG-UGGguGGGCGGguGGUGGGGGGg -3' miRNA: 3'- -UCCuACCuuCCCGUCuuCUACCCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 33396 | 0.78 | 0.300911 |
Target: 5'- cAGGAgUGGGAGGGCgccuggcucggggagGGAGGAgGGGGGGg -3' miRNA: 3'- -UCCU-ACCUUCCCG---------------UCUUCUaCCCCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 102031 | 0.77 | 0.357256 |
Target: 5'- cGGGGUGGuuGGGCGGggGucuccgugucugcGUGGGGGu -3' miRNA: 3'- -UCCUACCuuCCCGUCuuC-------------UACCCCUc -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 27195 | 0.76 | 0.399598 |
Target: 5'- cGGggGGAGGGGCGGggGAagcccccgGGGcGGGg -3' miRNA: 3'- uCCuaCCUUCCCGUCuuCUa-------CCC-CUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 149899 | 0.76 | 0.408268 |
Target: 5'- gAGGA-GGAGGaGGCGGAGGA-GGaGGAGg -3' miRNA: 3'- -UCCUaCCUUC-CCGUCUUCUaCC-CCUC- -5' |
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5107 | 3' | -55.4 | NC_001798.1 | + | 149869 | 0.76 | 0.408268 |
Target: 5'- gAGGA-GGAGGaGGCGGAGGA-GGaGGAGg -3' miRNA: 3'- -UCCUaCCUUC-CCGUCUUCUaCC-CCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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