miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5107 3' -55.4 NC_001798.1 + 146154 1.08 0.003322
Target:  5'- gAGGAUGGAAGGGCAGAAGAUGGGGAGu -3'
miRNA:   3'- -UCCUACCUUCCCGUCUUCUACCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 48590 0.87 0.092553
Target:  5'- gGGGcgGGAGGGGCGGGAGggGcGGGAGg -3'
miRNA:   3'- -UCCuaCCUUCCCGUCUUCuaC-CCCUC- -5'
5107 3' -55.4 NC_001798.1 + 48536 0.87 0.092553
Target:  5'- gGGGcgGGAGGGGCGGGAGggGcGGGAGg -3'
miRNA:   3'- -UCCuaCCUUCCCGUCUUCuaC-CCCUC- -5'
5107 3' -55.4 NC_001798.1 + 48563 0.87 0.092553
Target:  5'- gGGGcgGGAGGGGCGGGAGggGcGGGAGg -3'
miRNA:   3'- -UCCuaCCUUCCCGUCUUCuaC-CCCUC- -5'
5107 3' -55.4 NC_001798.1 + 48617 0.87 0.092553
Target:  5'- gGGGcgGGAGGGGCGGGAGggGcGGGAGg -3'
miRNA:   3'- -UCCuaCCUUCCCGUCUUCuaC-CCCUC- -5'
5107 3' -55.4 NC_001798.1 + 26662 0.85 0.114512
Target:  5'- cGGGAgcggGGGAGGG-GGGAGAUGGGGAGa -3'
miRNA:   3'- -UCCUa---CCUUCCCgUCUUCUACCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 27313 0.83 0.152693
Target:  5'- cGGGAUGGAGGGGagggAGggGGUGGcGGGGa -3'
miRNA:   3'- -UCCUACCUUCCCg---UCuuCUACC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 33154 0.83 0.164958
Target:  5'- gGGGAUGGggGGGaagggaGGAGGAggaGGGGGGg -3'
miRNA:   3'- -UCCUACCuuCCCg-----UCUUCUa--CCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 15191 0.82 0.17362
Target:  5'- gGGGGUGGggGGGCuGgcGAgccggGGGGAGc -3'
miRNA:   3'- -UCCUACCuuCCCGuCuuCUa----CCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 21554 0.82 0.187372
Target:  5'- cAGGGUGGggGGGgGGggG--GGGGAGg -3'
miRNA:   3'- -UCCUACCuuCCCgUCuuCuaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 6239 0.81 0.207195
Target:  5'- cGGggGGAcGGGCGGggGAcGGGGGGa -3'
miRNA:   3'- uCCuaCCUuCCCGUCuuCUaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 69650 0.8 0.240307
Target:  5'- uGGG-GGggGGuGguGGAGGUGGGGAGg -3'
miRNA:   3'- uCCUaCCuuCC-CguCUUCUACCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 153619 0.79 0.291185
Target:  5'- gGGGGUcGGAGGGGCgucAGggGGUcggaGGGGAGg -3'
miRNA:   3'- -UCCUA-CCUUCCCG---UCuuCUA----CCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 34184 0.79 0.291185
Target:  5'- uGGGUGGAAGGGaagaggaAGGAGAaagGGGGGGu -3'
miRNA:   3'- uCCUACCUUCCCg------UCUUCUa--CCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 36089 0.78 0.298107
Target:  5'- uAGG-UGGguGGGCGGguGGUGGGGGGg -3'
miRNA:   3'- -UCCuACCuuCCCGUCuuCUACCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 33396 0.78 0.300911
Target:  5'- cAGGAgUGGGAGGGCgccuggcucggggagGGAGGAgGGGGGGg -3'
miRNA:   3'- -UCCU-ACCUUCCCG---------------UCUUCUaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 102031 0.77 0.357256
Target:  5'- cGGGGUGGuuGGGCGGggGucuccgugucugcGUGGGGGu -3'
miRNA:   3'- -UCCUACCuuCCCGUCuuC-------------UACCCCUc -5'
5107 3' -55.4 NC_001798.1 + 27195 0.76 0.399598
Target:  5'- cGGggGGAGGGGCGGggGAagcccccgGGGcGGGg -3'
miRNA:   3'- uCCuaCCUUCCCGUCuuCUa-------CCC-CUC- -5'
5107 3' -55.4 NC_001798.1 + 149899 0.76 0.408268
Target:  5'- gAGGA-GGAGGaGGCGGAGGA-GGaGGAGg -3'
miRNA:   3'- -UCCUaCCUUC-CCGUCUUCUaCC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 149869 0.76 0.408268
Target:  5'- gAGGA-GGAGGaGGCGGAGGA-GGaGGAGg -3'
miRNA:   3'- -UCCUaCCUUC-CCGUCUUCUaCC-CCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.