miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5107 3' -55.4 NC_001798.1 + 101947 0.69 0.772518
Target:  5'- gAGGGUGGggGGaccGCcccggauAGAGGAggccccGGGGGGg -3'
miRNA:   3'- -UCCUACCuuCC---CG-------UCUUCUa-----CCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 15053 0.69 0.772518
Target:  5'- cGGAUGGGcccGGGGCgcgcGGggGGUGGuuuguugggguucGGAGu -3'
miRNA:   3'- uCCUACCU---UCCCG----UCuuCUACC-------------CCUC- -5'
5107 3' -55.4 NC_001798.1 + 146038 0.69 0.763945
Target:  5'- -cGGUGGggGGcgugguGguGAAcGAUGGGGGGa -3'
miRNA:   3'- ucCUACCuuCC------CguCUU-CUACCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 26808 0.69 0.763945
Target:  5'- gGGGGUcGGgcGGGCGGggGucgggcgGGcGGGGg -3'
miRNA:   3'- -UCCUA-CCuuCCCGUCuuCua-----CC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 26853 0.69 0.763945
Target:  5'- gGGGGUcGGgcGGGCGGggGucgggcgGGcGGGGg -3'
miRNA:   3'- -UCCUA-CCuuCCCGUCuuCua-----CC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 26898 0.69 0.763945
Target:  5'- gGGGGUcGGgcGGGCGGggGucgggcgGGcGGGGg -3'
miRNA:   3'- -UCCUA-CCuuCCCGUCuuCua-----CC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 26957 0.69 0.763945
Target:  5'- gGGGGUcGGgcGGGCGGggGucgggcgGGcGGGGg -3'
miRNA:   3'- -UCCUA-CCuuCCCGUCuuCua-----CC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 27002 0.69 0.763945
Target:  5'- gGGGGUcGGgcGGGCGGggGucgggcgGGcGGGGg -3'
miRNA:   3'- -UCCUA-CCuuCCCGUCuuCua-----CC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 19774 0.7 0.754305
Target:  5'- aGGGAU--AGGGGCAGgcGgcGGGGAa -3'
miRNA:   3'- -UCCUAccUUCCCGUCuuCuaCCCCUc -5'
5107 3' -55.4 NC_001798.1 + 30970 0.7 0.754305
Target:  5'- cGGGcgGGGGucGGGCGGggGucgGGcGGGGg -3'
miRNA:   3'- -UCCuaCCUU--CCCGUCuuCua-CC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 31003 0.7 0.754305
Target:  5'- cGGGcgGGGGucGGGCGGggGucgGGcGGGGg -3'
miRNA:   3'- -UCCuaCCUU--CCCGUCuuCua-CC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 31036 0.7 0.754305
Target:  5'- cGGGcgGGGGucGGGCGGggGucgGGcGGGGg -3'
miRNA:   3'- -UCCuaCCUU--CCCGUCuuCua-CC-CCUC- -5'
5107 3' -55.4 NC_001798.1 + 129870 0.7 0.748469
Target:  5'- gAGGAgGGggGuGGUGGccgaaagaaaaggaaGGGGUGGGGGGa -3'
miRNA:   3'- -UCCUaCCuuC-CCGUC---------------UUCUACCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 30030 0.7 0.734706
Target:  5'- aGGGAggcaGGGAGGagcccgagaGCGGggGAcagGGGGGGa -3'
miRNA:   3'- -UCCUa---CCUUCC---------CGUCuuCUa--CCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 32893 0.7 0.734706
Target:  5'- gAGGcgccucGGGGGCAGGgggAGGUGGGGGGg -3'
miRNA:   3'- -UCCuacc--UUCCCGUCU---UCUACCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 6362 0.7 0.734706
Target:  5'- cGGggGGAcGGGCcgGGggGccGGGGGGc -3'
miRNA:   3'- uCCuaCCUuCCCG--UCuuCuaCCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 15484 0.7 0.734706
Target:  5'- cGGGggGGucguGGGGGCuGGuguGGUGGGGGGc -3'
miRNA:   3'- -UCCuaCC----UUCCCGuCUu--CUACCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 30938 0.7 0.734706
Target:  5'- cGGcgGGGGucGGGCGGggGgcGGGcGGGg -3'
miRNA:   3'- uCCuaCCUU--CCCGUCuuCuaCCC-CUC- -5'
5107 3' -55.4 NC_001798.1 + 6458 0.7 0.724765
Target:  5'- gGGGAcGGggGGaCGGggGGacGGGGGGa -3'
miRNA:   3'- -UCCUaCCuuCCcGUCuuCUa-CCCCUC- -5'
5107 3' -55.4 NC_001798.1 + 6426 0.7 0.724765
Target:  5'- gGGGAcGGggGGaCGGggGGacGGGGGGa -3'
miRNA:   3'- -UCCUaCCuuCCcGUCuuCUa-CCCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.