miRNA display CGI


Results 81 - 100 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5108 5' -56.2 NC_001798.1 + 2716 0.68 0.806416
Target:  5'- cGGUGUCGgccaGCAGGGgGCGCAGGCu-- -3'
miRNA:   3'- -CCGCGGCg---CGUCUUgUGUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 153474 0.68 0.805527
Target:  5'- uGGCGCaccugcaCGCGCGGcgagaAGCACACcugcGGGCGGGg -3'
miRNA:   3'- -CCGCG-------GCGCGUC-----UUGUGUG----UCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 18624 0.68 0.797458
Target:  5'- -cCGCCGUGCauAGGuccGCAgACAGGCGAGu -3'
miRNA:   3'- ccGCGGCGCG--UCU---UGUgUGUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 121543 0.68 0.796554
Target:  5'- cGGCGCUGCGCcuggcguGGGGCcCGUGGGCGAc -3'
miRNA:   3'- -CCGCGGCGCG-------UCUUGuGUGUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 53300 0.68 0.78835
Target:  5'- cGGCGCCGauCGCAGcguccGGCugGCGGcGCGGc -3'
miRNA:   3'- -CCGCGGC--GCGUC-----UUGugUGUC-UGCUu -5'
5108 5' -56.2 NC_001798.1 + 147178 0.68 0.78835
Target:  5'- cGGCGCCGgGCGGAAgGCGucccccgcCcGGCGGu -3'
miRNA:   3'- -CCGCGGCgCGUCUUgUGU--------GuCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 115025 0.68 0.78835
Target:  5'- gGGCaagGCCGUGCGGAGC-C-UGGACGAc -3'
miRNA:   3'- -CCG---CGGCGCGUCUUGuGuGUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 2278 0.68 0.782816
Target:  5'- cGGCGCagCGCGCGGccagcgaggccagcGCGCGCGGGuCGAAc -3'
miRNA:   3'- -CCGCG--GCGCGUCu-------------UGUGUGUCU-GCUU- -5'
5108 5' -56.2 NC_001798.1 + 56716 0.68 0.779099
Target:  5'- uGGCGuuGCGCcgagAGAACgACACGGagucGCGGu -3'
miRNA:   3'- -CCGCggCGCG----UCUUG-UGUGUC----UGCUu -5'
5108 5' -56.2 NC_001798.1 + 97545 0.68 0.779099
Target:  5'- aGGCGUgGCGCgGGGACGCccGCGaGCGAGg -3'
miRNA:   3'- -CCGCGgCGCG-UCUUGUG--UGUcUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 98919 0.68 0.779099
Target:  5'- cGCGCCcggagGgGCAGAACuACACGGAgGGc -3'
miRNA:   3'- cCGCGG-----CgCGUCUUG-UGUGUCUgCUu -5'
5108 5' -56.2 NC_001798.1 + 150465 0.68 0.779099
Target:  5'- --gGCCGCGCgGGGGCGCGCGgcgcgccccGACGAc -3'
miRNA:   3'- ccgCGGCGCG-UCUUGUGUGU---------CUGCUu -5'
5108 5' -56.2 NC_001798.1 + 35327 0.68 0.779099
Target:  5'- cGGCGCCcgcaacCGCAGAGCACucaGCuGGCGc- -3'
miRNA:   3'- -CCGCGGc-----GCGUCUUGUG---UGuCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 17238 0.68 0.778167
Target:  5'- cGGgGUCGCGCGGGgccgagaacaaggACGCGguGugGAc -3'
miRNA:   3'- -CCgCGGCGCGUCU-------------UGUGUguCugCUu -5'
5108 5' -56.2 NC_001798.1 + 69498 0.69 0.769717
Target:  5'- gGGCGg-GCGCAGGACGCGcCGGAgCGGGg -3'
miRNA:   3'- -CCGCggCGCGUCUUGUGU-GUCU-GCUU- -5'
5108 5' -56.2 NC_001798.1 + 129294 0.69 0.769717
Target:  5'- aGGCaCCGCGCGG---GCGCGGAgGAGg -3'
miRNA:   3'- -CCGcGGCGCGUCuugUGUGUCUgCUU- -5'
5108 5' -56.2 NC_001798.1 + 1376 0.69 0.769717
Target:  5'- cGGCGUCGCGCcccAGcgcCACGUAGACGGg -3'
miRNA:   3'- -CCGCGGCGCG---UCuu-GUGUGUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 21956 0.69 0.769717
Target:  5'- gGGCGgaGCGCGGGAUgACGCGGGCc-- -3'
miRNA:   3'- -CCGCggCGCGUCUUG-UGUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 64900 0.69 0.769717
Target:  5'- cGCGCCcCGC-GAACGCACAGcGCGu- -3'
miRNA:   3'- cCGCGGcGCGuCUUGUGUGUC-UGCuu -5'
5108 5' -56.2 NC_001798.1 + 78569 0.69 0.769717
Target:  5'- aGGCgcugGCCGCGCGcGAGCGC-CGGGCc-- -3'
miRNA:   3'- -CCG----CGGCGCGU-CUUGUGuGUCUGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.