miRNA display CGI


Results 61 - 80 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5108 5' -56.2 NC_001798.1 + 34590 0.66 0.878931
Target:  5'- cGGCGCgGCGUcucgguGGGACGCGggcaaaGGGCGGc -3'
miRNA:   3'- -CCGCGgCGCG------UCUUGUGUg-----UCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 35327 0.68 0.779099
Target:  5'- cGGCGCCcgcaacCGCAGAGCACucaGCuGGCGc- -3'
miRNA:   3'- -CCGCGGc-----GCGUCUUGUG---UGuCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 36490 0.7 0.690986
Target:  5'- gGGCGCCgGCGCG----ACGCGGGCGGc -3'
miRNA:   3'- -CCGCGG-CGCGUcuugUGUGUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 36528 0.7 0.660392
Target:  5'- cGGCgGCCGgGCgGGGGCGCGCGG-CGGc -3'
miRNA:   3'- -CCG-CGGCgCG-UCUUGUGUGUCuGCUu -5'
5108 5' -56.2 NC_001798.1 + 36570 0.7 0.660392
Target:  5'- cGGCgGCCGgGCgGGGGCGCGCGG-CGGc -3'
miRNA:   3'- -CCG-CGGCgCG-UCUUGUGUGUCuGCUu -5'
5108 5' -56.2 NC_001798.1 + 36612 0.7 0.660392
Target:  5'- cGGCgGCCGgGCgGGGGCGCGCGG-CGGc -3'
miRNA:   3'- -CCG-CGGCgCG-UCUUGUGUGUCuGCUu -5'
5108 5' -56.2 NC_001798.1 + 37195 0.78 0.284018
Target:  5'- aGGCGCCGCGCcGAACG-ACGGGCGc- -3'
miRNA:   3'- -CCGCGGCGCGuCUUGUgUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 38184 0.71 0.638839
Target:  5'- uGGgGCCGCuggucgaGCAGGAgGCGCGGACu-- -3'
miRNA:   3'- -CCgCGGCG-------CGUCUUgUGUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 42214 0.66 0.88596
Target:  5'- aGCGCCGCGgguCGGcgUGCGCGgcGACGAAc -3'
miRNA:   3'- cCGCGGCGC---GUCuuGUGUGU--CUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 42520 0.68 0.816085
Target:  5'- cGCGCagcccgaucuugucgGCGCAgGAACACAC-GACGGAg -3'
miRNA:   3'- cCGCGg--------------CGCGU-CUUGUGUGuCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 42764 0.74 0.479616
Target:  5'- gGGCGgCGCGCGGGGCcgACAGGCGc- -3'
miRNA:   3'- -CCGCgGCGCGUCUUGugUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 43972 0.66 0.883875
Target:  5'- gGGCGUgggucgugggggauUGCGUAGGuCGCGCAGAUGu- -3'
miRNA:   3'- -CCGCG--------------GCGCGUCUuGUGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 44210 0.66 0.885268
Target:  5'- uGGUgagGCCGCGCugccccaGGGACAUGCGcccGACGAc -3'
miRNA:   3'- -CCG---CGGCGCG-------UCUUGUGUGU---CUGCUu -5'
5108 5' -56.2 NC_001798.1 + 44911 0.66 0.892763
Target:  5'- gGGUGCUGUGCgguuggGGAACGCGCcccGAgGAAc -3'
miRNA:   3'- -CCGCGGCGCG------UCUUGUGUGu--CUgCUU- -5'
5108 5' -56.2 NC_001798.1 + 46186 0.69 0.720139
Target:  5'- aGGCcucugguccgucgGCCGCGCGcAAUACGCGGAgGGAc -3'
miRNA:   3'- -CCG-------------CGGCGCGUcUUGUGUGUCUgCUU- -5'
5108 5' -56.2 NC_001798.1 + 47041 0.66 0.891421
Target:  5'- aGGCGCaCGCgGCguuaucgGGGACGCGCaaugccgGGGCGAc -3'
miRNA:   3'- -CCGCG-GCG-CG-------UCUUGUGUG-------UCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 47589 0.76 0.365097
Target:  5'- aGCGCCGCGCGGGACcCAC-GAgGAGc -3'
miRNA:   3'- cCGCGGCGCGUCUUGuGUGuCUgCUU- -5'
5108 5' -56.2 NC_001798.1 + 52499 0.69 0.76021
Target:  5'- cGCGCCgGCGCAgGGACgACGCGG-CGGc -3'
miRNA:   3'- cCGCGG-CGCGU-CUUG-UGUGUCuGCUu -5'
5108 5' -56.2 NC_001798.1 + 52738 0.75 0.424429
Target:  5'- cGCGCCGcCGCGGAACACGUGGACc-- -3'
miRNA:   3'- cCGCGGC-GCGUCUUGUGUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 53252 0.7 0.711149
Target:  5'- gGGCGUCcUGCGGcAGCGCGCcGACGAc -3'
miRNA:   3'- -CCGCGGcGCGUC-UUGUGUGuCUGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.