miRNA display CGI


Results 41 - 60 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5108 5' -56.2 NC_001798.1 + 25728 0.71 0.619317
Target:  5'- cGGCGCCcccgacgucucgGCGCuGGGCGCGCAGgGCGu- -3'
miRNA:   3'- -CCGCGG------------CGCGuCUUGUGUGUC-UGCuu -5'
5108 5' -56.2 NC_001798.1 + 26233 0.66 0.88596
Target:  5'- uGGCGCCcggcGCGCcGGACuucuGCGaGGACGAGg -3'
miRNA:   3'- -CCGCGG----CGCGuCUUG----UGUgUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 26306 0.69 0.76021
Target:  5'- cGCGCCGCuGCGGcccgucuacguGGCGCugGGGCGc- -3'
miRNA:   3'- cCGCGGCG-CGUC-----------UUGUGugUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 26375 0.69 0.750589
Target:  5'- cGgGCCGCgGCGGGaguucuGCGCGCGGGCGc- -3'
miRNA:   3'- cCgCGGCG-CGUCU------UGUGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 26437 0.7 0.701097
Target:  5'- uGGUGCUGCGCG--ACgACGCGGACGc- -3'
miRNA:   3'- -CCGCGGCGCGUcuUG-UGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 26485 0.71 0.619317
Target:  5'- gGGCGUCGgcCGCGGGccGCGCGgGGACGGu -3'
miRNA:   3'- -CCGCGGC--GCGUCU--UGUGUgUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 26739 0.67 0.847853
Target:  5'- uGGcCGCgCGCGUgugugagaaauaaAGAACGagACAGACGAAa -3'
miRNA:   3'- -CC-GCG-GCGCG-------------UCUUGUg-UGUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 27520 0.72 0.575344
Target:  5'- gGGCGCC-CGCGGGaaggcagccccgcgGCGCGCGGGgGGAg -3'
miRNA:   3'- -CCGCGGcGCGUCU--------------UGUGUGUCUgCUU- -5'
5108 5' -56.2 NC_001798.1 + 28669 0.67 0.823845
Target:  5'- cGGCGCCGCGUGGcGGCgGCcgAGGCGGu -3'
miRNA:   3'- -CCGCGGCGCGUC-UUG-UGugUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 28796 0.66 0.88596
Target:  5'- cGGCGgCGCGCGGGuccuccgccGC-CGCGGGCc-- -3'
miRNA:   3'- -CCGCgGCGCGUCU---------UGuGUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 29403 0.7 0.690986
Target:  5'- cGCGCCG-GCGGGGCGC-CGGGgGGAc -3'
miRNA:   3'- cCGCGGCgCGUCUUGUGuGUCUgCUU- -5'
5108 5' -56.2 NC_001798.1 + 29819 0.67 0.8323
Target:  5'- cGGcCGCCGCgGCAGAcccccgGCACGgugagaGGGCGAc -3'
miRNA:   3'- -CC-GCGGCG-CGUCU------UGUGUg-----UCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 30552 0.66 0.892763
Target:  5'- uGUGCCGUGU-----GCACGGACGAGa -3'
miRNA:   3'- cCGCGGCGCGucuugUGUGUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 30772 0.67 0.8323
Target:  5'- aGGCgGCCGUGCGGGccgGCACgGCcGugGAc -3'
miRNA:   3'- -CCG-CGGCGCGUCU---UGUG-UGuCugCUu -5'
5108 5' -56.2 NC_001798.1 + 30829 0.66 0.869463
Target:  5'- cGGCcCCGCGCucccugucgcugggGGGACACACGGuccGCGc- -3'
miRNA:   3'- -CCGcGGCGCG--------------UCUUGUGUGUC---UGCuu -5'
5108 5' -56.2 NC_001798.1 + 31217 0.72 0.578394
Target:  5'- uGGCGCCcCGCGGAGCAgcaGCAGcgGCGGc -3'
miRNA:   3'- -CCGCGGcGCGUCUUGUg--UGUC--UGCUu -5'
5108 5' -56.2 NC_001798.1 + 31347 0.68 0.815214
Target:  5'- gGGCG-CGCGCAG-GCGCGgcgggUGGGCGAAg -3'
miRNA:   3'- -CCGCgGCGCGUCuUGUGU-----GUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 31575 0.67 0.856535
Target:  5'- cGCGCCGCGCGccccCGCGCGGcCGu- -3'
miRNA:   3'- cCGCGGCGCGUcuu-GUGUGUCuGCuu -5'
5108 5' -56.2 NC_001798.1 + 31762 0.66 0.878931
Target:  5'- uGgGCCGgGCAGGcgcgaccgacGCGCGCGGGuCGGGa -3'
miRNA:   3'- cCgCGGCgCGUCU----------UGUGUGUCU-GCUU- -5'
5108 5' -56.2 NC_001798.1 + 31998 0.73 0.498785
Target:  5'- cGGCGCCGCGCcGGGCcccggacucggACuCGGGCGAc -3'
miRNA:   3'- -CCGCGGCGCGuCUUG-----------UGuGUCUGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.