miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5108 5' -56.2 NC_001798.1 + 9652 0.72 0.598806
Target:  5'- aGGCGCagcgggccgCGCGCGGAGgGCGCGGgAUGGGg -3'
miRNA:   3'- -CCGCG---------GCGCGUCUUgUGUGUC-UGCUU- -5'
5108 5' -56.2 NC_001798.1 + 11876 0.75 0.398294
Target:  5'- cGCGCugccgacccauaCGCGCAGGACAUACAGACc-- -3'
miRNA:   3'- cCGCG------------GCGCGUCUUGUGUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 11948 0.72 0.56723
Target:  5'- cGGCuGCCGCGCcagacccagcuccAGGGCGgAUAGGCGGGg -3'
miRNA:   3'- -CCG-CGGCGCG-------------UCUUGUgUGUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 13243 0.66 0.878931
Target:  5'- cGGgGCUGCGUucGGAugGgGCAGACc-- -3'
miRNA:   3'- -CCgCGGCGCG--UCUugUgUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 16177 0.67 0.856535
Target:  5'- cGGC-CCGCGgGGAccggggggACGCACGGGCc-- -3'
miRNA:   3'- -CCGcGGCGCgUCU--------UGUGUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 17238 0.68 0.778167
Target:  5'- cGGgGUCGCGCGGGgccgagaacaaggACGCGguGugGAc -3'
miRNA:   3'- -CCgCGGCGCGUCU-------------UGUGUguCugCUu -5'
5108 5' -56.2 NC_001798.1 + 18624 0.68 0.797458
Target:  5'- -cCGCCGUGCauAGGuccGCAgACAGGCGAGu -3'
miRNA:   3'- ccGCGGCGCG--UCU---UGUgUGUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 20355 0.7 0.701097
Target:  5'- uGGCGCUGCcggGCGGGuucggggcgGCACGCAGGaucCGAAa -3'
miRNA:   3'- -CCGCGGCG---CGUCU---------UGUGUGUCU---GCUU- -5'
5108 5' -56.2 NC_001798.1 + 21956 0.69 0.769717
Target:  5'- gGGCGgaGCGCGGGAUgACGCGGGCc-- -3'
miRNA:   3'- -CCGCggCGCGUCUUG-UGUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 22267 0.71 0.608027
Target:  5'- cGCGCCGgGCgcuaaugAGAugcCGCGCGGGCGGAg -3'
miRNA:   3'- cCGCGGCgCG-------UCUu--GUGUGUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 22322 0.69 0.720139
Target:  5'- gGGcCGCCGCcacggacGCGG-ACGCGCGGGCGu- -3'
miRNA:   3'- -CC-GCGGCG-------CGUCuUGUGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 22874 0.7 0.701097
Target:  5'- -cCGCCGCGCggcccggguucGGGugGCACGGugGGc -3'
miRNA:   3'- ccGCGGCGCG-----------UCUugUGUGUCugCUu -5'
5108 5' -56.2 NC_001798.1 + 23505 0.74 0.458028
Target:  5'- aGCGCCGCagaccacgccgcggGCGGGACccucgGCGCGGACGAc -3'
miRNA:   3'- cCGCGGCG--------------CGUCUUG-----UGUGUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 23884 0.69 0.721134
Target:  5'- gGGCGCCcgagGCGgAGGAgGCGCGGGCc-- -3'
miRNA:   3'- -CCGCGG----CGCgUCUUgUGUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 24460 0.68 0.806416
Target:  5'- cGGCGCCGCGgGGGugcucgccGCcCugGGGCGc- -3'
miRNA:   3'- -CCGCGGCGCgUCU--------UGuGugUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 24550 0.71 0.647057
Target:  5'- cGGCGCCgGCGguGGuggcggcggccggcGCGCGgAGGCGGg -3'
miRNA:   3'- -CCGCGG-CGCguCU--------------UGUGUgUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 24695 0.67 0.8323
Target:  5'- cGGCccGCCGCGCccccgcgcccGGGGCcCGCGGGCGc- -3'
miRNA:   3'- -CCG--CGGCGCG----------UCUUGuGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 24909 0.67 0.856535
Target:  5'- cGGCGCUGcCGCGGAGCccGCGCcuGCuGAGc -3'
miRNA:   3'- -CCGCGGC-GCGUCUUG--UGUGucUG-CUU- -5'
5108 5' -56.2 NC_001798.1 + 25044 0.67 0.864213
Target:  5'- cGCGCCGCGgGaGGCGCGCAaGCGc- -3'
miRNA:   3'- cCGCGGCGCgUcUUGUGUGUcUGCuu -5'
5108 5' -56.2 NC_001798.1 + 25101 0.71 0.629591
Target:  5'- cGGCGCCccGCGCcccccgaagaAGAGcCGCGCGGACGc- -3'
miRNA:   3'- -CCGCGG--CGCG----------UCUU-GUGUGUCUGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.