miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5108 5' -56.2 NC_001798.1 + 119232 0.72 0.588584
Target:  5'- cGGCuGCuCGCGCuGAGCGCccaGGACGGAu -3'
miRNA:   3'- -CCG-CG-GCGCGuCUUGUGug-UCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 9652 0.72 0.598806
Target:  5'- aGGCGCagcgggccgCGCGCGGAGgGCGCGGgAUGGGg -3'
miRNA:   3'- -CCGCG---------GCGCGUCUUgUGUGUC-UGCUU- -5'
5108 5' -56.2 NC_001798.1 + 22267 0.71 0.608027
Target:  5'- cGCGCCGgGCgcuaaugAGAugcCGCGCGGGCGGAg -3'
miRNA:   3'- cCGCGGCgCG-------UCUu--GUGUGUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 71561 0.71 0.609053
Target:  5'- gGGCGCCaGCGagcacACGCACGGGCGGc -3'
miRNA:   3'- -CCGCGG-CGCgucu-UGUGUGUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 26485 0.71 0.619317
Target:  5'- gGGCGUCGgcCGCGGGccGCGCGgGGACGGu -3'
miRNA:   3'- -CCGCGGC--GCGUCU--UGUGUgUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 25728 0.71 0.619317
Target:  5'- cGGCGCCcccgacgucucgGCGCuGGGCGCGCAGgGCGu- -3'
miRNA:   3'- -CCGCGG------------CGCGuCUUGUGUGUC-UGCuu -5'
5108 5' -56.2 NC_001798.1 + 25101 0.71 0.629591
Target:  5'- cGGCGCCccGCGCcccccgaagaAGAGcCGCGCGGACGc- -3'
miRNA:   3'- -CCGCGG--CGCG----------UCUU-GUGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 38184 0.71 0.638839
Target:  5'- uGGgGCCGCuggucgaGCAGGAgGCGCGGACu-- -3'
miRNA:   3'- -CCgCGGCG-------CGUCUUgUGUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 133672 0.71 0.639867
Target:  5'- aGCGCC-UGCcGGACGCACAGACa-- -3'
miRNA:   3'- cCGCGGcGCGuCUUGUGUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 58844 0.71 0.639867
Target:  5'- aGCGCCGCGUAGGcggccccgaGCGC-CAGGCa-- -3'
miRNA:   3'- cCGCGGCGCGUCU---------UGUGuGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 24550 0.71 0.647057
Target:  5'- cGGCGCCgGCGguGGuggcggcggccggcGCGCGgAGGCGGg -3'
miRNA:   3'- -CCGCGG-CGCguCU--------------UGUGUgUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 4037 0.71 0.64911
Target:  5'- cGGCcaccGCCGCGCGGGcccggcgGCGCucCAGGCGGc -3'
miRNA:   3'- -CCG----CGGCGCGUCU-------UGUGu-GUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 150811 0.71 0.654241
Target:  5'- gGGCGCCGCcgcugcugcugcuccGCGGGGCGC-CAGGgGGc -3'
miRNA:   3'- -CCGCGGCG---------------CGUCUUGUGuGUCUgCUu -5'
5108 5' -56.2 NC_001798.1 + 36570 0.7 0.660392
Target:  5'- cGGCgGCCGgGCgGGGGCGCGCGG-CGGc -3'
miRNA:   3'- -CCG-CGGCgCG-UCUUGUGUGUCuGCUu -5'
5108 5' -56.2 NC_001798.1 + 36528 0.7 0.660392
Target:  5'- cGGCgGCCGgGCgGGGGCGCGCGG-CGGc -3'
miRNA:   3'- -CCG-CGGCgCG-UCUUGUGUGUCuGCUu -5'
5108 5' -56.2 NC_001798.1 + 4214 0.7 0.660392
Target:  5'- cGGCGCUG-GCGGGG-GCGCGGGCGGc -3'
miRNA:   3'- -CCGCGGCgCGUCUUgUGUGUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 36612 0.7 0.660392
Target:  5'- cGGCgGCCGgGCgGGGGCGCGCGG-CGGc -3'
miRNA:   3'- -CCG-CGGCgCG-UCUUGUGUGUCuGCUu -5'
5108 5' -56.2 NC_001798.1 + 135502 0.7 0.670624
Target:  5'- cGGaCGCCGCGCAcGGCGCGauccaGGACGc- -3'
miRNA:   3'- -CC-GCGGCGCGUcUUGUGUg----UCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 56790 0.7 0.670624
Target:  5'- uGGcCGCCGacggcCGCGGAGguCACGGugGAGa -3'
miRNA:   3'- -CC-GCGGC-----GCGUCUUguGUGUCugCUU- -5'
5108 5' -56.2 NC_001798.1 + 153652 0.7 0.679807
Target:  5'- aGGCGuaccuucCCGCGCGGcGCGucCGCGGGCGGGg -3'
miRNA:   3'- -CCGC-------GGCGCGUCuUGU--GUGUCUGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.