miRNA display CGI


Results 41 - 60 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5108 5' -56.2 NC_001798.1 + 153032 0.7 0.680825
Target:  5'- gGGC-CCGCGCGGcGGCGCGCGGuuGGc -3'
miRNA:   3'- -CCGcGGCGCGUC-UUGUGUGUCugCUu -5'
5108 5' -56.2 NC_001798.1 + 77787 0.7 0.680825
Target:  5'- uGCGCCGCcuGCAGGcGCugGCGGGCa-- -3'
miRNA:   3'- cCGCGGCG--CGUCU-UGugUGUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 36490 0.7 0.690986
Target:  5'- gGGCGCCgGCGCG----ACGCGGGCGGc -3'
miRNA:   3'- -CCGCGG-CGCGUcuugUGUGUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 55979 0.7 0.690986
Target:  5'- cGCGCCGgGgAGGcCGCGgGGGCGAGg -3'
miRNA:   3'- cCGCGGCgCgUCUuGUGUgUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 149982 0.7 0.690986
Target:  5'- gGGCGCgGCGCccgcGGACGCcgGGGCGAGc -3'
miRNA:   3'- -CCGCGgCGCGu---CUUGUGugUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 29403 0.7 0.690986
Target:  5'- cGCGCCG-GCGGGGCGC-CGGGgGGAc -3'
miRNA:   3'- cCGCGGCgCGUCUUGUGuGUCUgCUU- -5'
5108 5' -56.2 NC_001798.1 + 147095 0.7 0.690986
Target:  5'- cGGCGCCGCGCGuu-CGCGaaaGGcGCGAAa -3'
miRNA:   3'- -CCGCGGCGCGUcuuGUGUg--UC-UGCUU- -5'
5108 5' -56.2 NC_001798.1 + 141480 0.7 0.698069
Target:  5'- cGGCucGCCGCGCGGGggGCugAuguccguggcccugCAGACGGAc -3'
miRNA:   3'- -CCG--CGGCGCGUCU--UGugU--------------GUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 150631 0.7 0.701097
Target:  5'- uGgGCCGCGCGGGGCugucuCGCGGGgGGc -3'
miRNA:   3'- cCgCGGCGCGUCUUGu----GUGUCUgCUu -5'
5108 5' -56.2 NC_001798.1 + 22874 0.7 0.701097
Target:  5'- -cCGCCGCGCggcccggguucGGGugGCACGGugGGc -3'
miRNA:   3'- ccGCGGCGCG-----------UCUugUGUGUCugCUu -5'
5108 5' -56.2 NC_001798.1 + 148420 0.7 0.701097
Target:  5'- gGGCGCCgGgGCGGGgguGgGCACGGGCGu- -3'
miRNA:   3'- -CCGCGG-CgCGUCU---UgUGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 2881 0.7 0.701097
Target:  5'- cGGC-CaCGCGCAGGucccCGCGCAGGCGc- -3'
miRNA:   3'- -CCGcG-GCGCGUCUu---GUGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 20355 0.7 0.701097
Target:  5'- uGGCGCUGCcggGCGGGuucggggcgGCACGCAGGaucCGAAa -3'
miRNA:   3'- -CCGCGGCG---CGUCU---------UGUGUGUCU---GCUU- -5'
5108 5' -56.2 NC_001798.1 + 26437 0.7 0.701097
Target:  5'- uGGUGCUGCGCG--ACgACGCGGACGc- -3'
miRNA:   3'- -CCGCGGCGCGUcuUG-UGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 3410 0.7 0.705125
Target:  5'- aGCGCCGCGUucucgcgcgccagcaGGGGCGCGUAGGCGc- -3'
miRNA:   3'- cCGCGGCGCG---------------UCUUGUGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 134312 0.7 0.711149
Target:  5'- uGCGCCuGgGCuGGGACcCGCAGACGGGu -3'
miRNA:   3'- cCGCGG-CgCG-UCUUGuGUGUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 85197 0.7 0.711149
Target:  5'- cGUGCCGCcCGcGAGCGCGCucGACGAGg -3'
miRNA:   3'- cCGCGGCGcGU-CUUGUGUGu-CUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 53252 0.7 0.711149
Target:  5'- gGGCGUCcUGCGGcAGCGCGCcGACGAc -3'
miRNA:   3'- -CCGCGGcGCGUC-UUGUGUGuCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 71101 0.69 0.720139
Target:  5'- cGGCGUgCGCGCccccgGGGACGCugauggcgcgcguGCGGACGGAc -3'
miRNA:   3'- -CCGCG-GCGCG-----UCUUGUG-------------UGUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 22322 0.69 0.720139
Target:  5'- gGGcCGCCGCcacggacGCGG-ACGCGCGGGCGu- -3'
miRNA:   3'- -CC-GCGGCG-------CGUCuUGUGUGUCUGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.