miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5108 5' -56.2 NC_001798.1 + 153652 0.7 0.679807
Target:  5'- aGGCGuaccuucCCGCGCGGcGCGucCGCGGGCGGGg -3'
miRNA:   3'- -CCGC-------GGCGCGUCuUGU--GUGUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 153474 0.68 0.805527
Target:  5'- uGGCGCaccugcaCGCGCGGcgagaAGCACACcugcGGGCGGGg -3'
miRNA:   3'- -CCGCG-------GCGCGUC-----UUGUGUG----UCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 153094 0.66 0.905674
Target:  5'- cGGCGCCGggcccuCGCGGAuauAUACGCGGGg--- -3'
miRNA:   3'- -CCGCGGC------GCGUCU---UGUGUGUCUgcuu -5'
5108 5' -56.2 NC_001798.1 + 153059 0.67 0.8323
Target:  5'- cGGCGCCGCcCccuGGGGCGgGCGGAgCGGc -3'
miRNA:   3'- -CCGCGGCGcG---UCUUGUgUGUCU-GCUu -5'
5108 5' -56.2 NC_001798.1 + 153032 0.7 0.680825
Target:  5'- gGGC-CCGCGCGGcGGCGCGCGGuuGGc -3'
miRNA:   3'- -CCGcGGCGCGUC-UUGUGUGUCugCUu -5'
5108 5' -56.2 NC_001798.1 + 150811 0.71 0.654241
Target:  5'- gGGCGCCGCcgcugcugcugcuccGCGGGGCGC-CAGGgGGc -3'
miRNA:   3'- -CCGCGGCG---------------CGUCUUGUGuGUCUgCUu -5'
5108 5' -56.2 NC_001798.1 + 150631 0.7 0.701097
Target:  5'- uGgGCCGCGCGGGGCugucuCGCGGGgGGc -3'
miRNA:   3'- cCgCGGCGCGUCUUGu----GUGUCUgCUu -5'
5108 5' -56.2 NC_001798.1 + 150569 0.69 0.750589
Target:  5'- cGGgGCC-CGCGGGgcgGCGCGgAGACGGc -3'
miRNA:   3'- -CCgCGGcGCGUCU---UGUGUgUCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 150465 0.68 0.779099
Target:  5'- --gGCCGCGCgGGGGCGCGCGgcgcgccccGACGAc -3'
miRNA:   3'- ccgCGGCGCG-UCUUGUGUGU---------CUGCUu -5'
5108 5' -56.2 NC_001798.1 + 150431 0.72 0.578394
Target:  5'- cGGCGCgGgGCGGAcuccggACGCGCGGgGCGAc -3'
miRNA:   3'- -CCGCGgCgCGUCU------UGUGUGUC-UGCUu -5'
5108 5' -56.2 NC_001798.1 + 150096 0.66 0.878931
Target:  5'- gGGCGa-GCGCGGGGCG-GCGGAgGAAg -3'
miRNA:   3'- -CCGCggCGCGUCUUGUgUGUCUgCUU- -5'
5108 5' -56.2 NC_001798.1 + 149982 0.7 0.690986
Target:  5'- gGGCGCgGCGCccgcGGACGCcgGGGCGAGc -3'
miRNA:   3'- -CCGCGgCGCGu---CUUGUGugUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 149730 0.67 0.856535
Target:  5'- cGGCccccGCgGCGCAGcAGCGCGgGGGcCGAGg -3'
miRNA:   3'- -CCG----CGgCGCGUC-UUGUGUgUCU-GCUU- -5'
5108 5' -56.2 NC_001798.1 + 148420 0.7 0.701097
Target:  5'- gGGCGCCgGgGCGGGgguGgGCACGGGCGu- -3'
miRNA:   3'- -CCGCGG-CgCGUCU---UgUGUGUCUGCuu -5'
5108 5' -56.2 NC_001798.1 + 147514 0.66 0.897388
Target:  5'- gGGCGCCuGCGUgugucucgugugagAGAGCGCGCcccuCGAAc -3'
miRNA:   3'- -CCGCGG-CGCG--------------UCUUGUGUGucu-GCUU- -5'
5108 5' -56.2 NC_001798.1 + 147178 0.68 0.78835
Target:  5'- cGGCGCCGgGCGGAAgGCGucccccgcCcGGCGGu -3'
miRNA:   3'- -CCGCGGCgCGUCUUgUGU--------GuCUGCUu -5'
5108 5' -56.2 NC_001798.1 + 147095 0.7 0.690986
Target:  5'- cGGCGCCGCGCGuu-CGCGaaaGGcGCGAAa -3'
miRNA:   3'- -CCGCGGCGCGUcuuGUGUg--UC-UGCUU- -5'
5108 5' -56.2 NC_001798.1 + 146832 0.67 0.840572
Target:  5'- gGGCGCgGCaGCAacGAACGCAgGGGCc-- -3'
miRNA:   3'- -CCGCGgCG-CGU--CUUGUGUgUCUGcuu -5'
5108 5' -56.2 NC_001798.1 + 145657 1.08 0.002971
Target:  5'- cGGCGCCGCGCAGAACACACAGACGAAc -3'
miRNA:   3'- -CCGCGGCGCGUCUUGUGUGUCUGCUU- -5'
5108 5' -56.2 NC_001798.1 + 142114 0.66 0.88596
Target:  5'- gGGCGUCGCuaAcGAGCGCGCugccGGACGc- -3'
miRNA:   3'- -CCGCGGCGcgU-CUUGUGUG----UCUGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.