miRNA display CGI


Results 41 - 60 of 107 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5109 3' -61.2 NC_001798.1 + 2665 0.66 0.717699
Target:  5'- gCGCCucccgCGGCGCGGaGGCGGGcGCGg-- -3'
miRNA:   3'- -GCGG-----GCUGCGUCgCCGCUCaCGCacu -5'
5109 3' -61.2 NC_001798.1 + 51679 0.66 0.717699
Target:  5'- cCGCCaGACGCuGCagcagGGCGAG-GCGcUGGc -3'
miRNA:   3'- -GCGGgCUGCGuCG-----CCGCUCaCGC-ACU- -5'
5109 3' -61.2 NC_001798.1 + 56273 0.66 0.717699
Target:  5'- cCGCagCCGACGaUAGCGcacCGAGgagGCGUGGg -3'
miRNA:   3'- -GCG--GGCUGC-GUCGCc--GCUCa--CGCACU- -5'
5109 3' -61.2 NC_001798.1 + 25498 0.66 0.726256
Target:  5'- gGCCCGcugcgccGCGCGGCGGCcuGGaUGCGc-- -3'
miRNA:   3'- gCGGGC-------UGCGUCGCCGc-UC-ACGCacu -5'
5109 3' -61.2 NC_001798.1 + 2940 0.66 0.727203
Target:  5'- aGCUCG-CGCAGCcaggcgcgcaGGCGGGgcgcgucgGCGUGc -3'
miRNA:   3'- gCGGGCuGCGUCG----------CCGCUCa-------CGCACu -5'
5109 3' -61.2 NC_001798.1 + 139336 0.66 0.697532
Target:  5'- gCGCCCGcGCGCgcugugcggccauGGCGGCGuccgGCGggGAg -3'
miRNA:   3'- -GCGGGC-UGCG-------------UCGCCGCuca-CGCa-CU- -5'
5109 3' -61.2 NC_001798.1 + 142135 0.66 0.688816
Target:  5'- uGCCgGACGCGGCacaGGUG-GUGCacGUGu -3'
miRNA:   3'- gCGGgCUGCGUCG---CCGCuCACG--CACu -5'
5109 3' -61.2 NC_001798.1 + 82184 0.66 0.679091
Target:  5'- -uUCCGcCGCAGCGGCGgcAGUGCc--- -3'
miRNA:   3'- gcGGGCuGCGUCGCCGC--UCACGcacu -5'
5109 3' -61.2 NC_001798.1 + 89631 0.66 0.679091
Target:  5'- uGCCCGAC-CAGCaGCGAGUccuGCa--- -3'
miRNA:   3'- gCGGGCUGcGUCGcCGCUCA---CGcacu -5'
5109 3' -61.2 NC_001798.1 + 145818 0.66 0.679091
Target:  5'- aCG-CgGGCGCGGCGGCGGucgGgGUGGg -3'
miRNA:   3'- -GCgGgCUGCGUCGCCGCUca-CgCACU- -5'
5109 3' -61.2 NC_001798.1 + 15059 0.66 0.679091
Target:  5'- gGCCCGGgGCGcGCGGgGGGUG-GUu- -3'
miRNA:   3'- gCGGGCUgCGU-CGCCgCUCACgCAcu -5'
5109 3' -61.2 NC_001798.1 + 23669 0.66 0.679091
Target:  5'- gGCCCG-CGCGGCGGUGGccGgccGCGa-- -3'
miRNA:   3'- gCGGGCuGCGUCGCCGCU--Ca--CGCacu -5'
5109 3' -61.2 NC_001798.1 + 79863 0.66 0.679091
Target:  5'- gCGCCUcgaugGACGCGGCGGcCGAGcUGUa--- -3'
miRNA:   3'- -GCGGG-----CUGCGUCGCC-GCUC-ACGcacu -5'
5109 3' -61.2 NC_001798.1 + 115452 0.66 0.679091
Target:  5'- uCGCUcaugaacauCGACGCGGCcGuCGGGgGCGUGAa -3'
miRNA:   3'- -GCGG---------GCUGCGUCGcC-GCUCaCGCACU- -5'
5109 3' -61.2 NC_001798.1 + 121292 0.66 0.679091
Target:  5'- cCGcCCCGACGguGgGGCGGccGCGa-- -3'
miRNA:   3'- -GC-GGGCUGCguCgCCGCUcaCGCacu -5'
5109 3' -61.2 NC_001798.1 + 17121 0.66 0.679091
Target:  5'- cCGCCCG-CG-AGCGGU-AGUGCGcggUGAg -3'
miRNA:   3'- -GCGGGCuGCgUCGCCGcUCACGC---ACU- -5'
5109 3' -61.2 NC_001798.1 + 66167 0.66 0.679091
Target:  5'- cCGCUCGACG-AGCGuGUucgGGGUGCuGUGGa -3'
miRNA:   3'- -GCGGGCUGCgUCGC-CG---CUCACG-CACU- -5'
5109 3' -61.2 NC_001798.1 + 15440 0.66 0.688816
Target:  5'- gGCCCcggaguCGUggGGCGGgGGGUcGCGUGGg -3'
miRNA:   3'- gCGGGcu----GCG--UCGCCgCUCA-CGCACU- -5'
5109 3' -61.2 NC_001798.1 + 79958 0.66 0.688816
Target:  5'- gCGUCCGGaGCGGCGGCGcc-GCGUc- -3'
miRNA:   3'- -GCGGGCUgCGUCGCCGCucaCGCAcu -5'
5109 3' -61.2 NC_001798.1 + 51181 0.66 0.688816
Target:  5'- gGCCCGG-GCGGCGGCGcccccccgccGG-GCGUc- -3'
miRNA:   3'- gCGGGCUgCGUCGCCGC----------UCaCGCAcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.