miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5109 3' -61.2 NC_001798.1 + 43464 0.67 0.659541
Target:  5'- -cCCCGcaguACGCGGgGGCG-G-GCGUGAg -3'
miRNA:   3'- gcGGGC----UGCGUCgCCGCuCaCGCACU- -5'
5109 3' -61.2 NC_001798.1 + 48184 0.67 0.630083
Target:  5'- aCGCCCGGC-UGGCGGCG-GUacaGCuGUGGg -3'
miRNA:   3'- -GCGGGCUGcGUCGCCGCuCA---CG-CACU- -5'
5109 3' -61.2 NC_001798.1 + 48364 0.67 0.659541
Target:  5'- cCGCCCGGgGCcGCcccGCGGG-GCGUGc -3'
miRNA:   3'- -GCGGGCUgCGuCGc--CGCUCaCGCACu -5'
5109 3' -61.2 NC_001798.1 + 49378 0.66 0.679091
Target:  5'- gGCCaUGGCGCAguuuuuccGCGGUGAGcUGCGg-- -3'
miRNA:   3'- gCGG-GCUGCGU--------CGCCGCUC-ACGCacu -5'
5109 3' -61.2 NC_001798.1 + 51181 0.66 0.688816
Target:  5'- gGCCCGG-GCGGCGGCGcccccccgccGG-GCGUc- -3'
miRNA:   3'- gCGGGCUgCGUCGCCGC----------UCaCGCAcu -5'
5109 3' -61.2 NC_001798.1 + 51679 0.66 0.717699
Target:  5'- cCGCCaGACGCuGCagcagGGCGAG-GCGcUGGc -3'
miRNA:   3'- -GCGGgCUGCGuCG-----CCGCUCaCGC-ACU- -5'
5109 3' -61.2 NC_001798.1 + 52577 0.68 0.571381
Target:  5'- uGgCCGACaCGGUGGuCGcGUGCGUGGc -3'
miRNA:   3'- gCgGGCUGcGUCGCC-GCuCACGCACU- -5'
5109 3' -61.2 NC_001798.1 + 53647 0.68 0.600636
Target:  5'- aCG-CCGcCGCGGUGGCGGGguUGCGcGAc -3'
miRNA:   3'- -GCgGGCuGCGUCGCCGCUC--ACGCaCU- -5'
5109 3' -61.2 NC_001798.1 + 54389 0.69 0.523484
Target:  5'- gGCCgCGGCGCGGuCGGCGGGagcUGCcggGAc -3'
miRNA:   3'- gCGG-GCUGCGUC-GCCGCUC---ACGca-CU- -5'
5109 3' -61.2 NC_001798.1 + 56170 0.68 0.581101
Target:  5'- aCGCCCGGgGgaCGGCGGgGGGgugGgGUGGg -3'
miRNA:   3'- -GCGGGCUgC--GUCGCCgCUCa--CgCACU- -5'
5109 3' -61.2 NC_001798.1 + 56273 0.66 0.717699
Target:  5'- cCGCagCCGACGaUAGCGcacCGAGgagGCGUGGg -3'
miRNA:   3'- -GCG--GGCUGC-GUCGCc--GCUCa--CGCACU- -5'
5109 3' -61.2 NC_001798.1 + 57751 0.69 0.542481
Target:  5'- gCGCCCGGCGCAGCGaGgaGGGUuGcCG-GAa -3'
miRNA:   3'- -GCGGGCUGCGUCGC-Cg-CUCA-C-GCaCU- -5'
5109 3' -61.2 NC_001798.1 + 58408 0.66 0.727203
Target:  5'- uCGCgCGGCGCAgGCGGCcAGcGCGa-- -3'
miRNA:   3'- -GCGgGCUGCGU-CGCCGcUCaCGCacu -5'
5109 3' -61.2 NC_001798.1 + 59102 0.67 0.63991
Target:  5'- aGCCCaGCGUGGCGGCcuggagccaGAGaUGCGcGAa -3'
miRNA:   3'- gCGGGcUGCGUCGCCG---------CUC-ACGCaCU- -5'
5109 3' -61.2 NC_001798.1 + 59466 0.67 0.63991
Target:  5'- uGCCCGG-GC-GCGGUGAG-GCGUu- -3'
miRNA:   3'- gCGGGCUgCGuCGCCGCUCaCGCAcu -5'
5109 3' -61.2 NC_001798.1 + 64725 0.67 0.630083
Target:  5'- gGgCCGAgGCGGCGGUGGGcaugagcGCGaUGAa -3'
miRNA:   3'- gCgGGCUgCGUCGCCGCUCa------CGC-ACU- -5'
5109 3' -61.2 NC_001798.1 + 65800 0.67 0.63991
Target:  5'- aGCCCGAUGCccccguuGCgGGCGAGgaugGCGc-- -3'
miRNA:   3'- gCGGGCUGCGu------CG-CCGCUCa---CGCacu -5'
5109 3' -61.2 NC_001798.1 + 66167 0.66 0.679091
Target:  5'- cCGCUCGACG-AGCGuGUucgGGGUGCuGUGGa -3'
miRNA:   3'- -GCGGGCUGCgUCGC-CG---CUCACG-CACU- -5'
5109 3' -61.2 NC_001798.1 + 66760 0.69 0.532953
Target:  5'- cCGCCUGGggUGCGGCGGCGuGggccGCG-GAa -3'
miRNA:   3'- -GCGGGCU--GCGUCGCCGCuCa---CGCaCU- -5'
5109 3' -61.2 NC_001798.1 + 67675 0.66 0.707168
Target:  5'- gGCUCgGACGCgaugaacggaaacAGCGGCGGGccCGUGGg -3'
miRNA:   3'- gCGGG-CUGCG-------------UCGCCGCUCacGCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.