miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5109 3' -61.2 NC_001798.1 + 20255 0.69 0.495488
Target:  5'- cCGCCCGAgaucUGCAGCaGGCGGccccacGUGCGcGGc -3'
miRNA:   3'- -GCGGGCU----GCGUCG-CCGCU------CACGCaCU- -5'
5109 3' -61.2 NC_001798.1 + 23669 0.66 0.679091
Target:  5'- gGCCCG-CGCGGCGGUGGccGgccGCGa-- -3'
miRNA:   3'- gCGGGCuGCGUCGCCGCU--Ca--CGCacu -5'
5109 3' -61.2 NC_001798.1 + 24005 0.69 0.504748
Target:  5'- aCGCCgGACGCGGaGGCGAugGgGUGGc -3'
miRNA:   3'- -GCGGgCUGCGUCgCCGCUcaCgCACU- -5'
5109 3' -61.2 NC_001798.1 + 24191 0.7 0.450428
Target:  5'- gGCCUGGCGCAcGUGGCGGccGcCGUGGc -3'
miRNA:   3'- gCGGGCUGCGU-CGCCGCUcaC-GCACU- -5'
5109 3' -61.2 NC_001798.1 + 24572 0.69 0.542481
Target:  5'- gGCCgGcGCGCGGaGGCGGGccGCGUGGc -3'
miRNA:   3'- gCGGgC-UGCGUCgCCGCUCa-CGCACU- -5'
5109 3' -61.2 NC_001798.1 + 25498 0.66 0.726256
Target:  5'- gGCCCGcugcgccGCGCGGCGGCcuGGaUGCGc-- -3'
miRNA:   3'- gCGGGC-------UGCGUCGCCGc-UC-ACGCacu -5'
5109 3' -61.2 NC_001798.1 + 26358 0.67 0.63991
Target:  5'- gGCCCGGCGgAGCuGcGCGGGccGCGgcggGAg -3'
miRNA:   3'- gCGGGCUGCgUCG-C-CGCUCa-CGCa---CU- -5'
5109 3' -61.2 NC_001798.1 + 26519 0.68 0.552066
Target:  5'- gGCCgCGGCggGCGGCGGCGuggaGGUG-GUGGg -3'
miRNA:   3'- gCGG-GCUG--CGUCGCCGC----UCACgCACU- -5'
5109 3' -61.2 NC_001798.1 + 26715 0.69 0.495488
Target:  5'- gCGCCUuuaagacaGACGCGGCGauggccgcGCGcGUGUGUGAg -3'
miRNA:   3'- -GCGGG--------CUGCGUCGC--------CGCuCACGCACU- -5'
5109 3' -61.2 NC_001798.1 + 27476 0.67 0.630083
Target:  5'- cCGUCCugccGCGCGGgGGCGGGcGCGgGAa -3'
miRNA:   3'- -GCGGGc---UGCGUCgCCGCUCaCGCaCU- -5'
5109 3' -61.2 NC_001798.1 + 28671 0.74 0.270412
Target:  5'- gCGCCgCGugGCGGCGGCcGAG-GCGg-- -3'
miRNA:   3'- -GCGG-GCugCGUCGCCG-CUCaCGCacu -5'
5109 3' -61.2 NC_001798.1 + 31140 0.76 0.199702
Target:  5'- gCGcCCCGGCGCGGgGGCGgcGGUGCGgGGg -3'
miRNA:   3'- -GC-GGGCUGCGUCgCCGC--UCACGCaCU- -5'
5109 3' -61.2 NC_001798.1 + 31348 0.66 0.679091
Target:  5'- gGCgCG-CGCAggcGCGGCGGGUGgGcGAa -3'
miRNA:   3'- gCGgGCuGCGU---CGCCGCUCACgCaCU- -5'
5109 3' -61.2 NC_001798.1 + 35407 0.72 0.3684
Target:  5'- cCGCCgGAUGCccgcgggggccuaauGCGGCGGGagGCGUGGg -3'
miRNA:   3'- -GCGGgCUGCGu--------------CGCCGCUCa-CGCACU- -5'
5109 3' -61.2 NC_001798.1 + 36024 0.67 0.636962
Target:  5'- gCGCCUuggcuguuugggggGugGCGGCGGUGGucgGCGUGc -3'
miRNA:   3'- -GCGGG--------------CugCGUCGCCGCUca-CGCACu -5'
5109 3' -61.2 NC_001798.1 + 36141 0.7 0.486306
Target:  5'- cCGCCgguggGGCGCGGCGGCGGucgGgGUGGg -3'
miRNA:   3'- -GCGGg----CUGCGUCGCCGCUca-CgCACU- -5'
5109 3' -61.2 NC_001798.1 + 36416 0.7 0.450428
Target:  5'- uGCCgGGCGgGGCGGUGGG-GCGg-- -3'
miRNA:   3'- gCGGgCUGCgUCGCCGCUCaCGCacu -5'
5109 3' -61.2 NC_001798.1 + 37497 0.67 0.659541
Target:  5'- gGCCCaACGC-GCGGCccgcuGUGCGUcGAg -3'
miRNA:   3'- gCGGGcUGCGuCGCCGcu---CACGCA-CU- -5'
5109 3' -61.2 NC_001798.1 + 38279 0.66 0.673238
Target:  5'- uGCCaCGugGCauucagacaguacggGGgGGCGAcGUGgGUGAu -3'
miRNA:   3'- gCGG-GCugCG---------------UCgCCGCU-CACgCACU- -5'
5109 3' -61.2 NC_001798.1 + 38795 0.76 0.214441
Target:  5'- gCGCUCGACGCGGuUGGCGAG-GCGg-- -3'
miRNA:   3'- -GCGGGCUGCGUC-GCCGCUCaCGCacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.