miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5109 3' -61.2 NC_001798.1 + 95679 0.7 0.486306
Target:  5'- gGUuuGGCgGCGGCGGCGGGgGCGg-- -3'
miRNA:   3'- gCGggCUG-CGUCGCCGCUCaCGCacu -5'
5109 3' -61.2 NC_001798.1 + 36141 0.7 0.486306
Target:  5'- cCGCCgguggGGCGCGGCGGCGGucgGgGUGGg -3'
miRNA:   3'- -GCGGg----CUGCGUCGCCGCUca-CgCACU- -5'
5109 3' -61.2 NC_001798.1 + 2136 0.69 0.494567
Target:  5'- uCGCCCG--GCAGCGGCGAGUagaggaucaccacGCGc-- -3'
miRNA:   3'- -GCGGGCugCGUCGCCGCUCA-------------CGCacu -5'
5109 3' -61.2 NC_001798.1 + 20255 0.69 0.495488
Target:  5'- cCGCCCGAgaucUGCAGCaGGCGGccccacGUGCGcGGc -3'
miRNA:   3'- -GCGGGCU----GCGUCG-CCGCU------CACGCaCU- -5'
5109 3' -61.2 NC_001798.1 + 26715 0.69 0.495488
Target:  5'- gCGCCUuuaagacaGACGCGGCGauggccgcGCGcGUGUGUGAg -3'
miRNA:   3'- -GCGGG--------CUGCGUCGC--------CGCuCACGCACU- -5'
5109 3' -61.2 NC_001798.1 + 125411 0.69 0.503819
Target:  5'- cCGCgCGACgGCcgagaagAGCGGCGAGUGCucgcagcagucGUGGa -3'
miRNA:   3'- -GCGgGCUG-CG-------UCGCCGCUCACG-----------CACU- -5'
5109 3' -61.2 NC_001798.1 + 14299 0.69 0.504748
Target:  5'- aGCCCccggaacgGAUG-AGUGGgGGGUGCGUGGg -3'
miRNA:   3'- gCGGG--------CUGCgUCGCCgCUCACGCACU- -5'
5109 3' -61.2 NC_001798.1 + 24005 0.69 0.504748
Target:  5'- aCGCCgGACGCGGaGGCGAugGgGUGGc -3'
miRNA:   3'- -GCGGgCUGCGUCgCCGCUcaCgCACU- -5'
5109 3' -61.2 NC_001798.1 + 142490 0.69 0.504748
Target:  5'- -cCCCGAgGCGGCGcGgGGGUGCGa-- -3'
miRNA:   3'- gcGGGCUgCGUCGC-CgCUCACGCacu -5'
5109 3' -61.2 NC_001798.1 + 78395 0.69 0.514081
Target:  5'- uCGCgUG-CGCGGCGGCguugGAGcGCGUGGa -3'
miRNA:   3'- -GCGgGCuGCGUCGCCG----CUCaCGCACU- -5'
5109 3' -61.2 NC_001798.1 + 54389 0.69 0.523484
Target:  5'- gGCCgCGGCGCGGuCGGCGGGagcUGCcggGAc -3'
miRNA:   3'- gCGG-GCUGCGUC-GCCGCUC---ACGca-CU- -5'
5109 3' -61.2 NC_001798.1 + 66760 0.69 0.532953
Target:  5'- cCGCCUGGggUGCGGCGGCGuGggccGCG-GAa -3'
miRNA:   3'- -GCGGGCU--GCGUCGCCGCuCa---CGCaCU- -5'
5109 3' -61.2 NC_001798.1 + 57751 0.69 0.542481
Target:  5'- gCGCCCGGCGCAGCGaGgaGGGUuGcCG-GAa -3'
miRNA:   3'- -GCGGGCUGCGUCGC-Cg-CUCA-C-GCaCU- -5'
5109 3' -61.2 NC_001798.1 + 24572 0.69 0.542481
Target:  5'- gGCCgGcGCGCGGaGGCGGGccGCGUGGc -3'
miRNA:   3'- gCGGgC-UGCGUCgCCGCUCa-CGCACU- -5'
5109 3' -61.2 NC_001798.1 + 80540 0.69 0.542481
Target:  5'- aCGCUCGGCcCGGCGGgGGG-GCGcGAg -3'
miRNA:   3'- -GCGGGCUGcGUCGCCgCUCaCGCaCU- -5'
5109 3' -61.2 NC_001798.1 + 26519 0.68 0.552066
Target:  5'- gGCCgCGGCggGCGGCGGCGuggaGGUG-GUGGg -3'
miRNA:   3'- gCGG-GCUG--CGUCGCCGC----UCACgCACU- -5'
5109 3' -61.2 NC_001798.1 + 146028 0.68 0.552066
Target:  5'- aGCCaaGGCGCGGUGG-GGG-GCGUGGu -3'
miRNA:   3'- gCGGg-CUGCGUCGCCgCUCaCGCACU- -5'
5109 3' -61.2 NC_001798.1 + 153220 0.68 0.571381
Target:  5'- cCGCCCGAcggcccgggccCGCGGCGGCgGAGgacccGCGc-- -3'
miRNA:   3'- -GCGGGCU-----------GCGUCGCCG-CUCa----CGCacu -5'
5109 3' -61.2 NC_001798.1 + 113629 0.68 0.571381
Target:  5'- uCGCCUG-CGCGGcCGGCGccgccauGUGgGUGGc -3'
miRNA:   3'- -GCGGGCuGCGUC-GCCGCu------CACgCACU- -5'
5109 3' -61.2 NC_001798.1 + 52577 0.68 0.571381
Target:  5'- uGgCCGACaCGGUGGuCGcGUGCGUGGc -3'
miRNA:   3'- gCgGGCUGcGUCGCC-GCuCACGCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.