miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5109 3' -61.2 NC_001798.1 + 31348 0.66 0.679091
Target:  5'- gGCgCG-CGCAggcGCGGCGGGUGgGcGAa -3'
miRNA:   3'- gCGgGCuGCGU---CGCCGCUCACgCaCU- -5'
5109 3' -61.2 NC_001798.1 + 49378 0.66 0.679091
Target:  5'- gGCCaUGGCGCAguuuuuccGCGGUGAGcUGCGg-- -3'
miRNA:   3'- gCGG-GCUGCGU--------CGCCGCUC-ACGCacu -5'
5109 3' -61.2 NC_001798.1 + 82184 0.66 0.679091
Target:  5'- -uUCCGcCGCAGCGGCGgcAGUGCc--- -3'
miRNA:   3'- gcGGGCuGCGUCGCCGC--UCACGcacu -5'
5109 3' -61.2 NC_001798.1 + 89631 0.66 0.679091
Target:  5'- uGCCCGAC-CAGCaGCGAGUccuGCa--- -3'
miRNA:   3'- gCGGGCUGcGUCGcCGCUCA---CGcacu -5'
5109 3' -61.2 NC_001798.1 + 145818 0.66 0.679091
Target:  5'- aCG-CgGGCGCGGCGGCGGucgGgGUGGg -3'
miRNA:   3'- -GCgGgCUGCGUCGCCGCUca-CgCACU- -5'
5109 3' -61.2 NC_001798.1 + 15059 0.66 0.679091
Target:  5'- gGCCCGGgGCGcGCGGgGGGUG-GUu- -3'
miRNA:   3'- gCGGGCUgCGU-CGCCgCUCACgCAcu -5'
5109 3' -61.2 NC_001798.1 + 23669 0.66 0.679091
Target:  5'- gGCCCG-CGCGGCGGUGGccGgccGCGa-- -3'
miRNA:   3'- gCGGGCuGCGUCGCCGCU--Ca--CGCacu -5'
5109 3' -61.2 NC_001798.1 + 79863 0.66 0.679091
Target:  5'- gCGCCUcgaugGACGCGGCGGcCGAGcUGUa--- -3'
miRNA:   3'- -GCGGG-----CUGCGUCGCC-GCUC-ACGcacu -5'
5109 3' -61.2 NC_001798.1 + 115452 0.66 0.679091
Target:  5'- uCGCUcaugaacauCGACGCGGCcGuCGGGgGCGUGAa -3'
miRNA:   3'- -GCGG---------GCUGCGUCGcC-GCUCaCGCACU- -5'
5109 3' -61.2 NC_001798.1 + 121292 0.66 0.679091
Target:  5'- cCGcCCCGACGguGgGGCGGccGCGa-- -3'
miRNA:   3'- -GC-GGGCUGCguCgCCGCUcaCGCacu -5'
5109 3' -61.2 NC_001798.1 + 17121 0.66 0.679091
Target:  5'- cCGCCCG-CG-AGCGGU-AGUGCGcggUGAg -3'
miRNA:   3'- -GCGGGCuGCgUCGCCGcUCACGC---ACU- -5'
5109 3' -61.2 NC_001798.1 + 66167 0.66 0.679091
Target:  5'- cCGCUCGACG-AGCGuGUucgGGGUGCuGUGGa -3'
miRNA:   3'- -GCGGGCUGCgUCGC-CG---CUCACG-CACU- -5'
5109 3' -61.2 NC_001798.1 + 38279 0.66 0.673238
Target:  5'- uGCCaCGugGCauucagacaguacggGGgGGCGAcGUGgGUGAu -3'
miRNA:   3'- gCGG-GCugCG---------------UCgCCGCU-CACgCACU- -5'
5109 3' -61.2 NC_001798.1 + 1504 0.66 0.66933
Target:  5'- gCGCCCGAgGCGGCGGCccg-GcCGUc- -3'
miRNA:   3'- -GCGGGCUgCGUCGCCGcucaC-GCAcu -5'
5109 3' -61.2 NC_001798.1 + 70307 0.66 0.66933
Target:  5'- uGUCgGGCGCGGCGGUcggcccggcgGAGgcgcggGCGUGc -3'
miRNA:   3'- gCGGgCUGCGUCGCCG----------CUCa-----CGCACu -5'
5109 3' -61.2 NC_001798.1 + 102550 0.66 0.66933
Target:  5'- aGgCCGcACGCggucAGCGGCGGGUGgCGg-- -3'
miRNA:   3'- gCgGGC-UGCG----UCGCCGCUCAC-GCacu -5'
5109 3' -61.2 NC_001798.1 + 37497 0.67 0.659541
Target:  5'- gGCCCaACGC-GCGGCccgcuGUGCGUcGAg -3'
miRNA:   3'- gCGGGcUGCGuCGCCGcu---CACGCA-CU- -5'
5109 3' -61.2 NC_001798.1 + 150572 0.67 0.659541
Target:  5'- gGCCCG-CGgGGCGGCGcGgagacgGCGgggGAg -3'
miRNA:   3'- gCGGGCuGCgUCGCCGCuCa-----CGCa--CU- -5'
5109 3' -61.2 NC_001798.1 + 43464 0.67 0.659541
Target:  5'- -cCCCGcaguACGCGGgGGCG-G-GCGUGAg -3'
miRNA:   3'- gcGGGC----UGCGUCgCCGCuCaCGCACU- -5'
5109 3' -61.2 NC_001798.1 + 14986 0.67 0.659541
Target:  5'- aGCuuGgGCGgGGgGGCGAG-GCGUGu -3'
miRNA:   3'- gCGggC-UGCgUCgCCGCUCaCGCACu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.