miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5109 3' -61.2 NC_001798.1 + 48364 0.67 0.659541
Target:  5'- cCGCCCGGgGCcGCcccGCGGG-GCGUGc -3'
miRNA:   3'- -GCGGGCUgCGuCGc--CGCUCaCGCACu -5'
5109 3' -61.2 NC_001798.1 + 96968 0.67 0.649732
Target:  5'- gGCgCUGGCGCGgaccGCGGCGGGcgGCGg-- -3'
miRNA:   3'- gCG-GGCUGCGU----CGCCGCUCa-CGCacu -5'
5109 3' -61.2 NC_001798.1 + 95908 0.67 0.649732
Target:  5'- uCGCCUccuuGugGUGGCgaguccugGGUGGGUGUGUGGg -3'
miRNA:   3'- -GCGGG----CugCGUCG--------CCGCUCACGCACU- -5'
5109 3' -61.2 NC_001798.1 + 26358 0.67 0.63991
Target:  5'- gGCCCGGCGgAGCuGcGCGGGccGCGgcggGAg -3'
miRNA:   3'- gCGGGCUGCgUCG-C-CGCUCa-CGCa---CU- -5'
5109 3' -61.2 NC_001798.1 + 149989 0.67 0.63991
Target:  5'- gCGCCCgcgGACGCcGgGGCGAGcgGCccGUGGc -3'
miRNA:   3'- -GCGGG---CUGCGuCgCCGCUCa-CG--CACU- -5'
5109 3' -61.2 NC_001798.1 + 59102 0.67 0.63991
Target:  5'- aGCCCaGCGUGGCGGCcuggagccaGAGaUGCGcGAa -3'
miRNA:   3'- gCGGGcUGCGUCGCCG---------CUC-ACGCaCU- -5'
5109 3' -61.2 NC_001798.1 + 59466 0.67 0.63991
Target:  5'- uGCCCGG-GC-GCGGUGAG-GCGUu- -3'
miRNA:   3'- gCGGGCUgCGuCGCCGCUCaCGCAcu -5'
5109 3' -61.2 NC_001798.1 + 65800 0.67 0.63991
Target:  5'- aGCCCGAUGCccccguuGCgGGCGAGgaugGCGc-- -3'
miRNA:   3'- gCGGGCUGCGu------CG-CCGCUCa---CGCacu -5'
5109 3' -61.2 NC_001798.1 + 36024 0.67 0.636962
Target:  5'- gCGCCUuggcuguuugggggGugGCGGCGGUGGucgGCGUGc -3'
miRNA:   3'- -GCGGG--------------CugCGUCGCCGCUca-CGCACu -5'
5109 3' -61.2 NC_001798.1 + 1424 0.67 0.630083
Target:  5'- gGCCCcagcgcgcgcaGGCGCGGU-GCGAGUGCGc-- -3'
miRNA:   3'- gCGGG-----------CUGCGUCGcCGCUCACGCacu -5'
5109 3' -61.2 NC_001798.1 + 48184 0.67 0.630083
Target:  5'- aCGCCCGGC-UGGCGGCG-GUacaGCuGUGGg -3'
miRNA:   3'- -GCGGGCUGcGUCGCCGCuCA---CG-CACU- -5'
5109 3' -61.2 NC_001798.1 + 27476 0.67 0.630083
Target:  5'- cCGUCCugccGCGCGGgGGCGGGcGCGgGAa -3'
miRNA:   3'- -GCGGGc---UGCGUCgCCGCUCaCGCaCU- -5'
5109 3' -61.2 NC_001798.1 + 64725 0.67 0.630083
Target:  5'- gGgCCGAgGCGGCGGUGGGcaugagcGCGaUGAa -3'
miRNA:   3'- gCgGGCUgCGUCGCCGCUCa------CGC-ACU- -5'
5109 3' -61.2 NC_001798.1 + 97186 0.67 0.620257
Target:  5'- aCGCgCUGGCGCAGCG-CGAGcUGCa--- -3'
miRNA:   3'- -GCG-GGCUGCGUCGCcGCUC-ACGcacu -5'
5109 3' -61.2 NC_001798.1 + 4372 0.67 0.620257
Target:  5'- gCGCgCCGGCgGCGGUGGUG-GUG-GUGGu -3'
miRNA:   3'- -GCG-GGCUG-CGUCGCCGCuCACgCACU- -5'
5109 3' -61.2 NC_001798.1 + 114845 0.67 0.614364
Target:  5'- cCGCCUGACGCacgccgacacgcgcgGGCGGCcggucgacgGGGUGC-UGGu -3'
miRNA:   3'- -GCGGGCUGCG---------------UCGCCG---------CUCACGcACU- -5'
5109 3' -61.2 NC_001798.1 + 126044 0.67 0.610439
Target:  5'- gCGCCUgGACGCGGCGGaCGAucgucuUGCG-GAc -3'
miRNA:   3'- -GCGGG-CUGCGUCGCC-GCUc-----ACGCaCU- -5'
5109 3' -61.2 NC_001798.1 + 101854 0.67 0.610439
Target:  5'- gGuCCCGGCgGCGGCGGaggGGGguggGCGUGu -3'
miRNA:   3'- gC-GGGCUG-CGUCGCCg--CUCa---CGCACu -5'
5109 3' -61.2 NC_001798.1 + 53647 0.68 0.600636
Target:  5'- aCG-CCGcCGCGGUGGCGGGguUGCGcGAc -3'
miRNA:   3'- -GCgGGCuGCGUCGCCGCUC--ACGCaCU- -5'
5109 3' -61.2 NC_001798.1 + 111598 0.68 0.599657
Target:  5'- gGCCCGGCGgGGCGGCcuccuggagccccGGGgGCGg-- -3'
miRNA:   3'- gCGGGCUGCgUCGCCG-------------CUCaCGCacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.