miRNA display CGI


Results 21 - 40 of 107 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5109 3' -61.2 NC_001798.1 + 2940 0.66 0.727203
Target:  5'- aGCUCG-CGCAGCcaggcgcgcaGGCGGGgcgcgucgGCGUGc -3'
miRNA:   3'- gCGGGCuGCGUCG----------CCGCUCa-------CGCACu -5'
5109 3' -61.2 NC_001798.1 + 25498 0.66 0.726256
Target:  5'- gGCCCGcugcgccGCGCGGCGGCcuGGaUGCGc-- -3'
miRNA:   3'- gCGGGC-------UGCGUCGCCGc-UC-ACGCacu -5'
5109 3' -61.2 NC_001798.1 + 56273 0.66 0.717699
Target:  5'- cCGCagCCGACGaUAGCGcacCGAGgagGCGUGGg -3'
miRNA:   3'- -GCG--GGCUGC-GUCGCc--GCUCa--CGCACU- -5'
5109 3' -61.2 NC_001798.1 + 51679 0.66 0.717699
Target:  5'- cCGCCaGACGCuGCagcagGGCGAG-GCGcUGGc -3'
miRNA:   3'- -GCGGgCUGCGuCG-----CCGCUCaCGC-ACU- -5'
5109 3' -61.2 NC_001798.1 + 2665 0.66 0.717699
Target:  5'- gCGCCucccgCGGCGCGGaGGCGGGcGCGg-- -3'
miRNA:   3'- -GCGG-----GCUGCGUCgCCGCUCaCGCacu -5'
5109 3' -61.2 NC_001798.1 + 147992 0.66 0.717699
Target:  5'- uGCCCGGCcaCAGCcGUGGGUGUGg-- -3'
miRNA:   3'- gCGGGCUGc-GUCGcCGCUCACGCacu -5'
5109 3' -61.2 NC_001798.1 + 122069 0.66 0.717699
Target:  5'- gCGUCgGACGCGGaGGCG-GUGC-UGGc -3'
miRNA:   3'- -GCGGgCUGCGUCgCCGCuCACGcACU- -5'
5109 3' -61.2 NC_001798.1 + 120381 0.66 0.708128
Target:  5'- uGCaCGACGCAGCGGgCGAuGUccGCGgGGg -3'
miRNA:   3'- gCGgGCUGCGUCGCC-GCU-CA--CGCaCU- -5'
5109 3' -61.2 NC_001798.1 + 67675 0.66 0.707168
Target:  5'- gGCUCgGACGCgaugaacggaaacAGCGGCGGGccCGUGGg -3'
miRNA:   3'- gCGGG-CUGCG-------------UCGCCGCUCacGCACU- -5'
5109 3' -61.2 NC_001798.1 + 51181 0.66 0.688816
Target:  5'- gGCCCGG-GCGGCGGCGcccccccgccGG-GCGUc- -3'
miRNA:   3'- gCGGGCUgCGUCGCCGC----------UCaCGCAcu -5'
5109 3' -61.2 NC_001798.1 + 142135 0.66 0.688816
Target:  5'- uGCCgGACGCGGCacaGGUG-GUGCacGUGu -3'
miRNA:   3'- gCGGgCUGCGUCG---CCGCuCACG--CACu -5'
5109 3' -61.2 NC_001798.1 + 139336 0.66 0.697532
Target:  5'- gCGCCCGcGCGCgcugugcggccauGGCGGCGuccgGCGggGAg -3'
miRNA:   3'- -GCGGGC-UGCG-------------UCGCCGCuca-CGCa-CU- -5'
5109 3' -61.2 NC_001798.1 + 79267 0.66 0.698498
Target:  5'- aGUUCGACGCGGCGGCc---GCG-GAc -3'
miRNA:   3'- gCGGGCUGCGUCGCCGcucaCGCaCU- -5'
5109 3' -61.2 NC_001798.1 + 86446 0.66 0.698498
Target:  5'- aGCCCGGgGaCGGgGGCcGGUuCGUGAg -3'
miRNA:   3'- gCGGGCUgC-GUCgCCGcUCAcGCACU- -5'
5109 3' -61.2 NC_001798.1 + 117678 0.66 0.698498
Target:  5'- aCGCgCGGC-CGGCGGCGuGUacGCGgggGAc -3'
miRNA:   3'- -GCGgGCUGcGUCGCCGCuCA--CGCa--CU- -5'
5109 3' -61.2 NC_001798.1 + 110991 0.66 0.698498
Target:  5'- aCGCCCGucagGCGC-GCGGUa--UGCGUGGc -3'
miRNA:   3'- -GCGGGC----UGCGuCGCCGcucACGCACU- -5'
5109 3' -61.2 NC_001798.1 + 37497 0.67 0.659541
Target:  5'- gGCCCaACGC-GCGGCccgcuGUGCGUcGAg -3'
miRNA:   3'- gCGGGcUGCGuCGCCGcu---CACGCA-CU- -5'
5109 3' -61.2 NC_001798.1 + 150572 0.67 0.659541
Target:  5'- gGCCCG-CGgGGCGGCGcGgagacgGCGgggGAg -3'
miRNA:   3'- gCGGGCuGCgUCGCCGCuCa-----CGCa--CU- -5'
5109 3' -61.2 NC_001798.1 + 43464 0.67 0.659541
Target:  5'- -cCCCGcaguACGCGGgGGCG-G-GCGUGAg -3'
miRNA:   3'- gcGGGC----UGCGUCgCCGCuCaCGCACU- -5'
5109 3' -61.2 NC_001798.1 + 14986 0.67 0.659541
Target:  5'- aGCuuGgGCGgGGgGGCGAG-GCGUGu -3'
miRNA:   3'- gCGggC-UGCgUCgCCGCUCaCGCACu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.