miRNA display CGI


Results 41 - 53 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5109 5' -56.7 NC_001798.1 + 71902 0.67 0.856952
Target:  5'- ----cCGCuuCCCGGCCCUGGaGGGc- -3'
miRNA:   3'- caaauGUGu-GGGCCGGGACUgCCCac -5'
5109 5' -56.7 NC_001798.1 + 2631 0.68 0.807343
Target:  5'- ---gGCGC-CCUGGCCggGGCGGGg- -3'
miRNA:   3'- caaaUGUGuGGGCCGGgaCUGCCCac -5'
5109 5' -56.7 NC_001798.1 + 57228 0.67 0.81605
Target:  5'- ---cAUACACCaguuGGCCCccgGGCGGGg- -3'
miRNA:   3'- caaaUGUGUGGg---CCGGGa--CUGCCCac -5'
5109 5' -56.7 NC_001798.1 + 142175 0.67 0.81605
Target:  5'- ---gACGCGCgCGGUUCUGACGcGGg- -3'
miRNA:   3'- caaaUGUGUGgGCCGGGACUGC-CCac -5'
5109 5' -56.7 NC_001798.1 + 79283 0.67 0.832961
Target:  5'- ---cGCGgACCUGGCCCcGugGgcGGUGg -3'
miRNA:   3'- caaaUGUgUGGGCCGGGaCugC--CCAC- -5'
5109 5' -56.7 NC_001798.1 + 92588 0.67 0.832961
Target:  5'- --cUACGCGcCCCGGCCCUG-CGa--- -3'
miRNA:   3'- caaAUGUGU-GGGCCGGGACuGCccac -5'
5109 5' -56.7 NC_001798.1 + 99950 0.67 0.841149
Target:  5'- ----cCACGCCCGcGCCaCUG-CGGGa- -3'
miRNA:   3'- caaauGUGUGGGC-CGG-GACuGCCCac -5'
5109 5' -56.7 NC_001798.1 + 48181 0.67 0.848357
Target:  5'- ---cGCACGCCCGGCUggcggcgguacagCUGugGGa-- -3'
miRNA:   3'- caaaUGUGUGGGCCGG-------------GACugCCcac -5'
5109 5' -56.7 NC_001798.1 + 29476 0.67 0.849148
Target:  5'- ----gUACACCCGGuuggucCCCgggGACGGGg- -3'
miRNA:   3'- caaauGUGUGGGCC------GGGa--CUGCCCac -5'
5109 5' -56.7 NC_001798.1 + 52437 0.67 0.849148
Target:  5'- --gUACGCGCUgcacaCGGCCCUGGCGa--- -3'
miRNA:   3'- caaAUGUGUGG-----GCCGGGACUGCccac -5'
5109 5' -56.7 NC_001798.1 + 1414 0.67 0.849148
Target:  5'- ---gGCGCGCCCaGGCCCcagcgcgcgcaGGCGcGGUGc -3'
miRNA:   3'- caaaUGUGUGGG-CCGGGa----------CUGC-CCAC- -5'
5109 5' -56.7 NC_001798.1 + 93858 0.67 0.856952
Target:  5'- --cUACGCcgccuuCUCGGCCCUgaagcgcgcgGACGGGUc -3'
miRNA:   3'- caaAUGUGu-----GGGCCGGGA----------CUGCCCAc -5'
5109 5' -56.7 NC_001798.1 + 71363 0.66 0.895472
Target:  5'- ---cGCGCACUgcacccaguacauauCGGCCCUGGagGGGUu -3'
miRNA:   3'- caaaUGUGUGG---------------GCCGGGACUg-CCCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.