miRNA display CGI


Results 41 - 53 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5109 5' -56.7 NC_001798.1 + 102553 0.66 0.87195
Target:  5'- ----cCGCACgCGGUCagcGGCGGGUGg -3'
miRNA:   3'- caaauGUGUGgGCCGGga-CUGCCCAC- -5'
5109 5' -56.7 NC_001798.1 + 107232 0.68 0.761614
Target:  5'- ----cCGCGCCCGGCacgaaCCUGGuccUGGGUGu -3'
miRNA:   3'- caaauGUGUGGGCCG-----GGACU---GCCCAC- -5'
5109 5' -56.7 NC_001798.1 + 110275 0.66 0.892838
Target:  5'- ---gGCGCgACCuCGGCCUcGugGGGg- -3'
miRNA:   3'- caaaUGUG-UGG-GCCGGGaCugCCCac -5'
5109 5' -56.7 NC_001798.1 + 110544 0.73 0.531541
Target:  5'- -gUUAUgauUACCgCGGCCCUGGCGGGc- -3'
miRNA:   3'- caAAUGu--GUGG-GCCGGGACUGCCCac -5'
5109 5' -56.7 NC_001798.1 + 117496 0.66 0.886097
Target:  5'- --cUGCGCAaCgCGGUCgUGGCGGGa- -3'
miRNA:   3'- caaAUGUGU-GgGCCGGgACUGCCCac -5'
5109 5' -56.7 NC_001798.1 + 119415 0.69 0.742464
Target:  5'- ---gACAU-CCUGGCCCUGGCcccggcgguucGGGUGu -3'
miRNA:   3'- caaaUGUGuGGGCCGGGACUG-----------CCCAC- -5'
5109 5' -56.7 NC_001798.1 + 122406 0.76 0.345496
Target:  5'- ---aGCugGCCaCGGCCCUGACGGa-- -3'
miRNA:   3'- caaaUGugUGG-GCCGGGACUGCCcac -5'
5109 5' -56.7 NC_001798.1 + 129350 0.69 0.722932
Target:  5'- ---aGCGCcCgCCGGgCCUGGCGGGg- -3'
miRNA:   3'- caaaUGUGuG-GGCCgGGACUGCCCac -5'
5109 5' -56.7 NC_001798.1 + 141192 0.7 0.662765
Target:  5'- uUUUAaGCACCUgGGCCCgcggGACGGGg- -3'
miRNA:   3'- cAAAUgUGUGGG-CCGGGa---CUGCCCac -5'
5109 5' -56.7 NC_001798.1 + 142175 0.67 0.81605
Target:  5'- ---gACGCGCgCGGUUCUGACGcGGg- -3'
miRNA:   3'- caaaUGUGUGgGCCGGGACUGC-CCac -5'
5109 5' -56.7 NC_001798.1 + 144422 0.69 0.713045
Target:  5'- ---gACGCuggacagccgACCCGGCCgCUaGACGGGUc -3'
miRNA:   3'- caaaUGUG----------UGGGCCGG-GA-CUGCCCAc -5'
5109 5' -56.7 NC_001798.1 + 144722 1.07 0.003232
Target:  5'- aGUUUACACACCCGGCCCUGACGGGUGc -3'
miRNA:   3'- -CAAAUGUGUGGGCCGGGACUGCCCAC- -5'
5109 5' -56.7 NC_001798.1 + 150285 0.71 0.642422
Target:  5'- ---cGCGCcuGCCCGGCCCaGACucugugcuuGGGUGu -3'
miRNA:   3'- caaaUGUG--UGGGCCGGGaCUG---------CCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.