miRNA display CGI


Results 21 - 40 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5109 5' -56.7 NC_001798.1 + 57228 0.67 0.81605
Target:  5'- ---cAUACACCaguuGGCCCccgGGCGGGg- -3'
miRNA:   3'- caaaUGUGUGGg---CCGGGa--CUGCCCac -5'
5109 5' -56.7 NC_001798.1 + 59453 0.69 0.722932
Target:  5'- ---aACGCACCCcgcguGCCCgGGCGcGGUGa -3'
miRNA:   3'- caaaUGUGUGGGc----CGGGaCUGC-CCAC- -5'
5109 5' -56.7 NC_001798.1 + 70567 0.7 0.683011
Target:  5'- --cUGCGCACCacggCGGCCCUGGgGccGGUGc -3'
miRNA:   3'- caaAUGUGUGG----GCCGGGACUgC--CCAC- -5'
5109 5' -56.7 NC_001798.1 + 71363 0.66 0.895472
Target:  5'- ---cGCGCACUgcacccaguacauauCGGCCCUGGagGGGUu -3'
miRNA:   3'- caaaUGUGUGG---------------GCCGGGACUg-CCCAc -5'
5109 5' -56.7 NC_001798.1 + 71902 0.67 0.856952
Target:  5'- ----cCGCuuCCCGGCCCUGGaGGGc- -3'
miRNA:   3'- caaauGUGu-GGGCCGGGACUgCCCac -5'
5109 5' -56.7 NC_001798.1 + 72846 0.66 0.892838
Target:  5'- ---cACGCGCggcaCgGGCCCcGAgCGGGUGg -3'
miRNA:   3'- caaaUGUGUG----GgCCGGGaCU-GCCCAC- -5'
5109 5' -56.7 NC_001798.1 + 74422 0.66 0.87122
Target:  5'- ---gAC-CGCCgCGGCCCUGcaccucuACGGGg- -3'
miRNA:   3'- caaaUGuGUGG-GCCGGGAC-------UGCCCac -5'
5109 5' -56.7 NC_001798.1 + 75958 0.66 0.892838
Target:  5'- ---aGCGCGCCgGGcCCCUGACc-GUGa -3'
miRNA:   3'- caaaUGUGUGGgCC-GGGACUGccCAC- -5'
5109 5' -56.7 NC_001798.1 + 76957 0.66 0.879133
Target:  5'- ---gGCGCugCgGGCggaCCUGugGGGg- -3'
miRNA:   3'- caaaUGUGugGgCCG---GGACugCCCac -5'
5109 5' -56.7 NC_001798.1 + 79283 0.67 0.832961
Target:  5'- ---cGCGgACCUGGCCCcGugGgcGGUGg -3'
miRNA:   3'- caaaUGUgUGGGCCGGGaCugC--CCAC- -5'
5109 5' -56.7 NC_001798.1 + 80389 0.68 0.807343
Target:  5'- -------gGCCCaGGCCCUGGCGGcgGUGa -3'
miRNA:   3'- caaaugugUGGG-CCGGGACUGCC--CAC- -5'
5109 5' -56.7 NC_001798.1 + 80537 0.7 0.652601
Target:  5'- ---cAgACGCUCGGCCC-GGCGGGg- -3'
miRNA:   3'- caaaUgUGUGGGCCGGGaCUGCCCac -5'
5109 5' -56.7 NC_001798.1 + 81528 0.7 0.70309
Target:  5'- --gUACGCACCgCGGCCCau-CGGGc- -3'
miRNA:   3'- caaAUGUGUGG-GCCGGGacuGCCCac -5'
5109 5' -56.7 NC_001798.1 + 81769 0.66 0.892838
Target:  5'- ---cGCGCGcCCCGGgCCUccgccccccccGAgGGGUGg -3'
miRNA:   3'- caaaUGUGU-GGGCCgGGA-----------CUgCCCAC- -5'
5109 5' -56.7 NC_001798.1 + 92588 0.67 0.832961
Target:  5'- --cUACGCGcCCCGGCCCUG-CGa--- -3'
miRNA:   3'- caaAUGUGU-GGGCCGGGACuGCccac -5'
5109 5' -56.7 NC_001798.1 + 93132 0.7 0.672904
Target:  5'- gGUUUGagcaGCGCCUGGCCUcggugaUGGCGGGc- -3'
miRNA:   3'- -CAAAUg---UGUGGGCCGGG------ACUGCCCac -5'
5109 5' -56.7 NC_001798.1 + 93858 0.67 0.856952
Target:  5'- --cUACGCcgccuuCUCGGCCCUgaagcgcgcgGACGGGUc -3'
miRNA:   3'- caaAUGUGu-----GGGCCGGGA----------CUGCCCAc -5'
5109 5' -56.7 NC_001798.1 + 95512 0.75 0.385433
Target:  5'- aGUUUAC-CACCCGcGCCCUGgagcGCGGGc- -3'
miRNA:   3'- -CAAAUGuGUGGGC-CGGGAC----UGCCCac -5'
5109 5' -56.7 NC_001798.1 + 99950 0.67 0.841149
Target:  5'- ----cCACGCCCGcGCCaCUG-CGGGa- -3'
miRNA:   3'- caaauGUGUGGGC-CGG-GACuGCCCac -5'
5109 5' -56.7 NC_001798.1 + 102004 0.68 0.798478
Target:  5'- ---gGCAgAUagaCGGCCUUGGCGGGg- -3'
miRNA:   3'- caaaUGUgUGg--GCCGGGACUGCCCac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.