miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5109 5' -56.7 NC_001798.1 + 1414 0.67 0.849148
Target:  5'- ---gGCGCGCCCaGGCCCcagcgcgcgcaGGCGcGGUGc -3'
miRNA:   3'- caaaUGUGUGGG-CCGGGa----------CUGC-CCAC- -5'
5109 5' -56.7 NC_001798.1 + 2003 0.68 0.780309
Target:  5'- -gUUGCcCGCCCaggcGGCCgUGGCGGGc- -3'
miRNA:   3'- caAAUGuGUGGG----CCGGgACUGCCCac -5'
5109 5' -56.7 NC_001798.1 + 2631 0.68 0.807343
Target:  5'- ---gGCGC-CCUGGCCggGGCGGGg- -3'
miRNA:   3'- caaaUGUGuGGGCCGGgaCUGCCCac -5'
5109 5' -56.7 NC_001798.1 + 4104 0.73 0.521736
Target:  5'- ---gGCGgGCUCGGCCCUGgGCGGGc- -3'
miRNA:   3'- caaaUGUgUGGGCCGGGAC-UGCCCac -5'
5109 5' -56.7 NC_001798.1 + 8060 0.68 0.793087
Target:  5'- --gUGCggACcCCCGGUCCUGACcacgucccggggacaGGGUGg -3'
miRNA:   3'- caaAUG--UGuGGGCCGGGACUG---------------CCCAC- -5'
5109 5' -56.7 NC_001798.1 + 10869 0.7 0.683011
Target:  5'- ---aACACcaACCCGGCCCcgcgagccaUGuuCGGGUGg -3'
miRNA:   3'- caaaUGUG--UGGGCCGGG---------ACu-GCCCAC- -5'
5109 5' -56.7 NC_001798.1 + 18759 0.66 0.892838
Target:  5'- ---gACGCaaGCCCGGCUCUGugGaGUu -3'
miRNA:   3'- caaaUGUG--UGGGCCGGGACugCcCAc -5'
5109 5' -56.7 NC_001798.1 + 19839 0.66 0.87195
Target:  5'- -gUUGCGCGacaCGcGCCCggGGCGGGUa -3'
miRNA:   3'- caAAUGUGUgg-GC-CGGGa-CUGCCCAc -5'
5109 5' -56.7 NC_001798.1 + 22875 0.66 0.892838
Target:  5'- ---cGC-CGCgCGGCCCggguuCGGGUGg -3'
miRNA:   3'- caaaUGuGUGgGCCGGGacu--GCCCAC- -5'
5109 5' -56.7 NC_001798.1 + 25867 0.69 0.752092
Target:  5'- --gUGCGCGCCgcggacUGGCCCgccGACGGGc- -3'
miRNA:   3'- caaAUGUGUGG------GCCGGGa--CUGCCCac -5'
5109 5' -56.7 NC_001798.1 + 27775 0.73 0.521736
Target:  5'- --cUGCGCACgCCaGCCggGACGGGUGa -3'
miRNA:   3'- caaAUGUGUG-GGcCGGgaCUGCCCAC- -5'
5109 5' -56.7 NC_001798.1 + 28611 0.8 0.221537
Target:  5'- ---cGCGCGCCUGGCCC-GACGGGg- -3'
miRNA:   3'- caaaUGUGUGGGCCGGGaCUGCCCac -5'
5109 5' -56.7 NC_001798.1 + 29476 0.67 0.849148
Target:  5'- ----gUACACCCGGuuggucCCCgggGACGGGg- -3'
miRNA:   3'- caaauGUGUGGGCC------GGGa--CUGCCCac -5'
5109 5' -56.7 NC_001798.1 + 33535 0.77 0.294728
Target:  5'- --aUGCACGCCCucuGCCCccgggGACGGGUGg -3'
miRNA:   3'- caaAUGUGUGGGc--CGGGa----CUGCCCAC- -5'
5109 5' -56.7 NC_001798.1 + 37531 0.66 0.886097
Target:  5'- ---gACACGCCCcaaGCCCcaggguggugUGGCGGGa- -3'
miRNA:   3'- caaaUGUGUGGGc--CGGG----------ACUGCCCac -5'
5109 5' -56.7 NC_001798.1 + 48181 0.67 0.848357
Target:  5'- ---cGCACGCCCGGCUggcggcgguacagCUGugGGa-- -3'
miRNA:   3'- caaaUGUGUGGGCCGG-------------GACugCCcac -5'
5109 5' -56.7 NC_001798.1 + 51558 0.7 0.693075
Target:  5'- -----uGCGCUCGGCCCUGGCccuGGGa- -3'
miRNA:   3'- caaaugUGUGGGCCGGGACUG---CCCac -5'
5109 5' -56.7 NC_001798.1 + 52437 0.67 0.849148
Target:  5'- --gUACGCGCUgcacaCGGCCCUGGCGa--- -3'
miRNA:   3'- caaAUGUGUGG-----GCCGGGACUGCccac -5'
5109 5' -56.7 NC_001798.1 + 54001 0.7 0.70309
Target:  5'- ---gACGCGCCUGGCCCaccUGugGGa-- -3'
miRNA:   3'- caaaUGUGUGGGCCGGG---ACugCCcac -5'
5109 5' -56.7 NC_001798.1 + 57024 0.68 0.771023
Target:  5'- ---cGCGCACCCaGGuCCCguacgcgGACGGGc- -3'
miRNA:   3'- caaaUGUGUGGG-CC-GGGa------CUGCCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.