Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5109 | 5' | -56.7 | NC_001798.1 | + | 81528 | 0.7 | 0.70309 |
Target: 5'- --gUACGCACCgCGGCCCau-CGGGc- -3' miRNA: 3'- caaAUGUGUGG-GCCGGGacuGCCCac -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 80537 | 0.7 | 0.652601 |
Target: 5'- ---cAgACGCUCGGCCC-GGCGGGg- -3' miRNA: 3'- caaaUgUGUGGGCCGGGaCUGCCCac -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 80389 | 0.68 | 0.807343 |
Target: 5'- -------gGCCCaGGCCCUGGCGGcgGUGa -3' miRNA: 3'- caaaugugUGGG-CCGGGACUGCC--CAC- -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 79283 | 0.67 | 0.832961 |
Target: 5'- ---cGCGgACCUGGCCCcGugGgcGGUGg -3' miRNA: 3'- caaaUGUgUGGGCCGGGaCugC--CCAC- -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 76957 | 0.66 | 0.879133 |
Target: 5'- ---gGCGCugCgGGCggaCCUGugGGGg- -3' miRNA: 3'- caaaUGUGugGgCCG---GGACugCCCac -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 75958 | 0.66 | 0.892838 |
Target: 5'- ---aGCGCGCCgGGcCCCUGACc-GUGa -3' miRNA: 3'- caaaUGUGUGGgCC-GGGACUGccCAC- -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 74422 | 0.66 | 0.87122 |
Target: 5'- ---gAC-CGCCgCGGCCCUGcaccucuACGGGg- -3' miRNA: 3'- caaaUGuGUGG-GCCGGGAC-------UGCCCac -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 72846 | 0.66 | 0.892838 |
Target: 5'- ---cACGCGCggcaCgGGCCCcGAgCGGGUGg -3' miRNA: 3'- caaaUGUGUG----GgCCGGGaCU-GCCCAC- -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 71902 | 0.67 | 0.856952 |
Target: 5'- ----cCGCuuCCCGGCCCUGGaGGGc- -3' miRNA: 3'- caaauGUGu-GGGCCGGGACUgCCCac -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 71363 | 0.66 | 0.895472 |
Target: 5'- ---cGCGCACUgcacccaguacauauCGGCCCUGGagGGGUu -3' miRNA: 3'- caaaUGUGUGG---------------GCCGGGACUg-CCCAc -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 70567 | 0.7 | 0.683011 |
Target: 5'- --cUGCGCACCacggCGGCCCUGGgGccGGUGc -3' miRNA: 3'- caaAUGUGUGG----GCCGGGACUgC--CCAC- -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 59453 | 0.69 | 0.722932 |
Target: 5'- ---aACGCACCCcgcguGCCCgGGCGcGGUGa -3' miRNA: 3'- caaaUGUGUGGGc----CGGGaCUGC-CCAC- -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 57228 | 0.67 | 0.81605 |
Target: 5'- ---cAUACACCaguuGGCCCccgGGCGGGg- -3' miRNA: 3'- caaaUGUGUGGg---CCGGGa--CUGCCCac -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 57024 | 0.68 | 0.771023 |
Target: 5'- ---cGCGCACCCaGGuCCCguacgcgGACGGGc- -3' miRNA: 3'- caaaUGUGUGGG-CC-GGGa------CUGCCCac -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 54001 | 0.7 | 0.70309 |
Target: 5'- ---gACGCGCCUGGCCCaccUGugGGa-- -3' miRNA: 3'- caaaUGUGUGGGCCGGG---ACugCCcac -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 52437 | 0.67 | 0.849148 |
Target: 5'- --gUACGCGCUgcacaCGGCCCUGGCGa--- -3' miRNA: 3'- caaAUGUGUGG-----GCCGGGACUGCccac -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 51558 | 0.7 | 0.693075 |
Target: 5'- -----uGCGCUCGGCCCUGGCccuGGGa- -3' miRNA: 3'- caaaugUGUGGGCCGGGACUG---CCCac -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 48181 | 0.67 | 0.848357 |
Target: 5'- ---cGCACGCCCGGCUggcggcgguacagCUGugGGa-- -3' miRNA: 3'- caaaUGUGUGGGCCGG-------------GACugCCcac -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 37531 | 0.66 | 0.886097 |
Target: 5'- ---gACACGCCCcaaGCCCcaggguggugUGGCGGGa- -3' miRNA: 3'- caaaUGUGUGGGc--CGGG----------ACUGCCCac -5' |
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5109 | 5' | -56.7 | NC_001798.1 | + | 33535 | 0.77 | 0.294728 |
Target: 5'- --aUGCACGCCCucuGCCCccgggGACGGGUGg -3' miRNA: 3'- caaAUGUGUGGGc--CGGGa----CUGCCCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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