miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5109 5' -56.7 NC_001798.1 + 79283 0.67 0.832961
Target:  5'- ---cGCGgACCUGGCCCcGugGgcGGUGg -3'
miRNA:   3'- caaaUGUgUGGGCCGGGaCugC--CCAC- -5'
5109 5' -56.7 NC_001798.1 + 92588 0.67 0.832961
Target:  5'- --cUACGCGcCCCGGCCCUG-CGa--- -3'
miRNA:   3'- caaAUGUGU-GGGCCGGGACuGCccac -5'
5109 5' -56.7 NC_001798.1 + 142175 0.67 0.81605
Target:  5'- ---gACGCGCgCGGUUCUGACGcGGg- -3'
miRNA:   3'- caaaUGUGUGgGCCGGGACUGC-CCac -5'
5109 5' -56.7 NC_001798.1 + 57228 0.67 0.81605
Target:  5'- ---cAUACACCaguuGGCCCccgGGCGGGg- -3'
miRNA:   3'- caaaUGUGUGGg---CCGGGa--CUGCCCac -5'
5109 5' -56.7 NC_001798.1 + 2631 0.68 0.807343
Target:  5'- ---gGCGC-CCUGGCCggGGCGGGg- -3'
miRNA:   3'- caaaUGUGuGGGCCGGgaCUGCCCac -5'
5109 5' -56.7 NC_001798.1 + 80389 0.68 0.807343
Target:  5'- -------gGCCCaGGCCCUGGCGGcgGUGa -3'
miRNA:   3'- caaaugugUGGG-CCGGGACUGCC--CAC- -5'
5109 5' -56.7 NC_001798.1 + 102004 0.68 0.798478
Target:  5'- ---gGCAgAUagaCGGCCUUGGCGGGg- -3'
miRNA:   3'- caaaUGUgUGg--GCCGGGACUGCCCac -5'
5109 5' -56.7 NC_001798.1 + 8060 0.68 0.793087
Target:  5'- --gUGCggACcCCCGGUCCUGACcacgucccggggacaGGGUGg -3'
miRNA:   3'- caaAUG--UGuGGGCCGGGACUG---------------CCCAC- -5'
5109 5' -56.7 NC_001798.1 + 2003 0.68 0.780309
Target:  5'- -gUUGCcCGCCCaggcGGCCgUGGCGGGc- -3'
miRNA:   3'- caAAUGuGUGGG----CCGGgACUGCCCac -5'
5109 5' -56.7 NC_001798.1 + 57024 0.68 0.771023
Target:  5'- ---cGCGCACCCaGGuCCCguacgcgGACGGGc- -3'
miRNA:   3'- caaaUGUGUGGG-CC-GGGa------CUGCCCac -5'
5109 5' -56.7 NC_001798.1 + 107232 0.68 0.761614
Target:  5'- ----cCGCGCCCGGCacgaaCCUGGuccUGGGUGu -3'
miRNA:   3'- caaauGUGUGGGCCG-----GGACU---GCCCAC- -5'
5109 5' -56.7 NC_001798.1 + 25867 0.69 0.752092
Target:  5'- --gUGCGCGCCgcggacUGGCCCgccGACGGGc- -3'
miRNA:   3'- caaAUGUGUGG------GCCGGGa--CUGCCCac -5'
5109 5' -56.7 NC_001798.1 + 119415 0.69 0.742464
Target:  5'- ---gACAU-CCUGGCCCUGGCcccggcgguucGGGUGu -3'
miRNA:   3'- caaaUGUGuGGGCCGGGACUG-----------CCCAC- -5'
5109 5' -56.7 NC_001798.1 + 129350 0.69 0.722932
Target:  5'- ---aGCGCcCgCCGGgCCUGGCGGGg- -3'
miRNA:   3'- caaaUGUGuG-GGCCgGGACUGCCCac -5'
5109 5' -56.7 NC_001798.1 + 59453 0.69 0.722932
Target:  5'- ---aACGCACCCcgcguGCCCgGGCGcGGUGa -3'
miRNA:   3'- caaaUGUGUGGGc----CGGGaCUGC-CCAC- -5'
5109 5' -56.7 NC_001798.1 + 144422 0.69 0.713045
Target:  5'- ---gACGCuggacagccgACCCGGCCgCUaGACGGGUc -3'
miRNA:   3'- caaaUGUG----------UGGGCCGG-GA-CUGCCCAc -5'
5109 5' -56.7 NC_001798.1 + 81528 0.7 0.70309
Target:  5'- --gUACGCACCgCGGCCCau-CGGGc- -3'
miRNA:   3'- caaAUGUGUGG-GCCGGGacuGCCCac -5'
5109 5' -56.7 NC_001798.1 + 54001 0.7 0.70309
Target:  5'- ---gACGCGCCUGGCCCaccUGugGGa-- -3'
miRNA:   3'- caaaUGUGUGGGCCGGG---ACugCCcac -5'
5109 5' -56.7 NC_001798.1 + 51558 0.7 0.693075
Target:  5'- -----uGCGCUCGGCCCUGGCccuGGGa- -3'
miRNA:   3'- caaaugUGUGGGCCGGGACUG---CCCac -5'
5109 5' -56.7 NC_001798.1 + 10869 0.7 0.683011
Target:  5'- ---aACACcaACCCGGCCCcgcgagccaUGuuCGGGUGg -3'
miRNA:   3'- caaaUGUG--UGGGCCGGG---------ACu-GCCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.