Results 41 - 60 of 69 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5110 | 3' | -58.5 | NC_001798.1 | + | 78381 | 0.68 | 0.708658 |
Target: 5'- cGAGGACGCGcuggUCgcgUgCGCGGCGGCGu -3' miRNA: 3'- -CUCUUGUGUa---GGa--GgGCGCCGCCGUc -5' |
|||||||
5110 | 3' | -58.5 | NC_001798.1 | + | 84496 | 0.75 | 0.330078 |
Target: 5'- -cGAACGCGUCC-CCCG-GGCGGCc- -3' miRNA: 3'- cuCUUGUGUAGGaGGGCgCCGCCGuc -5' |
|||||||
5110 | 3' | -58.5 | NC_001798.1 | + | 85230 | 0.67 | 0.775589 |
Target: 5'- gGAGAGCgACGUcgcgcccgcCCcCCCGCGGcCGcGCGGg -3' miRNA: 3'- -CUCUUG-UGUA---------GGaGGGCGCC-GC-CGUC- -5' |
|||||||
5110 | 3' | -58.5 | NC_001798.1 | + | 85294 | 0.67 | 0.775589 |
Target: 5'- cGGGGGCcgGgGUCCgCCCGCGGCccgcccGCAGa -3' miRNA: 3'- -CUCUUG--UgUAGGaGGGCGCCGc-----CGUC- -5' |
|||||||
5110 | 3' | -58.5 | NC_001798.1 | + | 87983 | 0.7 | 0.588278 |
Target: 5'- -uGGACGCG-CCUCCCGgGGgguCGGCAu -3' miRNA: 3'- cuCUUGUGUaGGAGGGCgCC---GCCGUc -5' |
|||||||
5110 | 3' | -58.5 | NC_001798.1 | + | 88058 | 0.72 | 0.453632 |
Target: 5'- gGGGGGCGggcuCGUCC-CCUGgGGCGGCGGc -3' miRNA: 3'- -CUCUUGU----GUAGGaGGGCgCCGCCGUC- -5' |
|||||||
5110 | 3' | -58.5 | NC_001798.1 | + | 90395 | 0.68 | 0.717501 |
Target: 5'- gGGGGGCGCGguugggCCggcgcguUCCCGCGGCcgggcuugaGGCGGu -3' miRNA: 3'- -CUCUUGUGUa-----GG-------AGGGCGCCG---------CCGUC- -5' |
|||||||
5110 | 3' | -58.5 | NC_001798.1 | + | 95204 | 0.68 | 0.708658 |
Target: 5'- cGGGAACugGgCCagCCUGCugGGCGGCAa -3' miRNA: 3'- -CUCUUGugUaGGa-GGGCG--CCGCCGUc -5' |
|||||||
5110 | 3' | -58.5 | NC_001798.1 | + | 96686 | 0.71 | 0.509624 |
Target: 5'- uGGAGCGCGUCCgggaguuuaUgGUGGCGGCGGu -3' miRNA: 3'- cUCUUGUGUAGGag-------GgCGCCGCCGUC- -5' |
|||||||
5110 | 3' | -58.5 | NC_001798.1 | + | 101842 | 0.72 | 0.462738 |
Target: 5'- gGGGGAgGCGUgggUCCCgGCGGCGGCGGa -3' miRNA: 3'- -CUCUUgUGUAgg-AGGG-CGCCGCCGUC- -5' |
|||||||
5110 | 3' | -58.5 | NC_001798.1 | + | 102526 | 0.7 | 0.568308 |
Target: 5'- uAGGcCACcgUC-CCCGCGGCcGGCAGg -3' miRNA: 3'- cUCUuGUGuaGGaGGGCGCCG-CCGUC- -5' |
|||||||
5110 | 3' | -58.5 | NC_001798.1 | + | 102620 | 0.68 | 0.698774 |
Target: 5'- cGGGGAucCACAaauaaCUCCCGUcgccgGGCGGCGGa -3' miRNA: 3'- -CUCUU--GUGUag---GAGGGCG-----CCGCCGUC- -5' |
|||||||
5110 | 3' | -58.5 | NC_001798.1 | + | 105175 | 0.72 | 0.453632 |
Target: 5'- -uGAAC-C-UCCaUCuCCGCGGCGGCGGg -3' miRNA: 3'- cuCUUGuGuAGG-AG-GGCGCCGCCGUC- -5' |
|||||||
5110 | 3' | -58.5 | NC_001798.1 | + | 105392 | 0.67 | 0.728229 |
Target: 5'- gGAGGGCgGCGUUCUCcagggccgCCGCGGCcGCGGu -3' miRNA: 3'- -CUCUUG-UGUAGGAG--------GGCGCCGcCGUC- -5' |
|||||||
5110 | 3' | -58.5 | NC_001798.1 | + | 116333 | 0.69 | 0.618448 |
Target: 5'- gGGGGGCACGagCCcgUCUaCGCGGCGGCGu -3' miRNA: 3'- -CUCUUGUGUa-GG--AGG-GCGCCGCCGUc -5' |
|||||||
5110 | 3' | -58.5 | NC_001798.1 | + | 121696 | 0.67 | 0.747477 |
Target: 5'- uGGGGGcCGCGg-CUCCCGCcgccgcgacggaGGCGGCGGc -3' miRNA: 3'- -CUCUU-GUGUagGAGGGCG------------CCGCCGUC- -5' |
|||||||
5110 | 3' | -58.5 | NC_001798.1 | + | 123953 | 0.69 | 0.628535 |
Target: 5'- -uGGugGCA-CCUCCC-CGGCGGCc- -3' miRNA: 3'- cuCUugUGUaGGAGGGcGCCGCCGuc -5' |
|||||||
5110 | 3' | -58.5 | NC_001798.1 | + | 124260 | 0.66 | 0.784722 |
Target: 5'- -uGGACGCGguuaUCCUGCGGCaGGCGa -3' miRNA: 3'- cuCUUGUGUagg-AGGGCGCCG-CCGUc -5' |
|||||||
5110 | 3' | -58.5 | NC_001798.1 | + | 135756 | 0.68 | 0.708658 |
Target: 5'- uGAG-ACGaAUCCUCCgGCGGcCGGCc- -3' miRNA: 3'- -CUCuUGUgUAGGAGGgCGCC-GCCGuc -5' |
|||||||
5110 | 3' | -58.5 | NC_001798.1 | + | 139810 | 0.67 | 0.775589 |
Target: 5'- cGGGAAuCACGUCCaggCCCaGCuGgGGCAGc -3' miRNA: 3'- -CUCUU-GUGUAGGa--GGG-CGcCgCCGUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home