miRNA display CGI


Results 21 - 40 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5110 3' -58.5 NC_001798.1 + 27262 0.66 0.811288
Target:  5'- cGGGAcCGCAg-C-CCCGUGGCGcGCGGg -3'
miRNA:   3'- -CUCUuGUGUagGaGGGCGCCGC-CGUC- -5'
5110 3' -58.5 NC_001798.1 + 27457 0.66 0.814728
Target:  5'- --cGGCACAgccugcuaguccccgUCCUgCCgCGCGGgGGCGGg -3'
miRNA:   3'- cucUUGUGU---------------AGGA-GG-GCGCCgCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 27529 0.71 0.528936
Target:  5'- cGGGAAgGCAg-C-CCCGCGGCGcGCGGg -3'
miRNA:   3'- -CUCUUgUGUagGaGGGCGCCGC-CGUC- -5'
5110 3' -58.5 NC_001798.1 + 28070 0.69 0.608372
Target:  5'- cGAGAGCGCGccggccgcguccUCgCUCCUGCGGCgcuGGCu- -3'
miRNA:   3'- -CUCUUGUGU------------AG-GAGGGCGCCG---CCGuc -5'
5110 3' -58.5 NC_001798.1 + 39421 0.67 0.728229
Target:  5'- cGGGGCGCggCCgUCCGCGuGCGGgGGg -3'
miRNA:   3'- cUCUUGUGuaGGaGGGCGC-CGCCgUC- -5'
5110 3' -58.5 NC_001798.1 + 42157 0.73 0.401152
Target:  5'- gGAGGACGCGgaUCUCCCGCGGgGccGCGGa -3'
miRNA:   3'- -CUCUUGUGUa-GGAGGGCGCCgC--CGUC- -5'
5110 3' -58.5 NC_001798.1 + 42740 0.66 0.801701
Target:  5'- cGAGGGCcCGUCg-CCCGCacagacgGGCGGCGc -3'
miRNA:   3'- -CUCUUGuGUAGgaGGGCG-------CCGCCGUc -5'
5110 3' -58.5 NC_001798.1 + 46276 0.7 0.578274
Target:  5'- uGAGAAUgucaaagccuGCGUCCUCCuCGCGcuuUGGCAGa -3'
miRNA:   3'- -CUCUUG----------UGUAGGAGG-GCGCc--GCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 48287 0.66 0.819839
Target:  5'- cGAGGGCAagaaCCUCCUGCaGCGcGCGa -3'
miRNA:   3'- -CUCUUGUgua-GGAGGGCGcCGC-CGUc -5'
5110 3' -58.5 NC_001798.1 + 48655 0.69 0.648708
Target:  5'- aAGGACACG-CCUCCCuuccgagcGCGGgGGaCGGg -3'
miRNA:   3'- cUCUUGUGUaGGAGGG--------CGCCgCC-GUC- -5'
5110 3' -58.5 NC_001798.1 + 49822 0.74 0.3597
Target:  5'- -cGAGCACcugaaCCUCCCgcuggugcgaaguGCGGCGGCGGa -3'
miRNA:   3'- cuCUUGUGua---GGAGGG-------------CGCCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 51167 0.74 0.384537
Target:  5'- -cGAcGCGCGUCCgaggCCCG-GGCGGCGGc -3'
miRNA:   3'- cuCU-UGUGUAGGa---GGGCgCCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 51439 0.67 0.747477
Target:  5'- cGGGGCGCggCCUUCCGCGaCGGUcgAGa -3'
miRNA:   3'- cUCUUGUGuaGGAGGGCGCcGCCG--UC- -5'
5110 3' -58.5 NC_001798.1 + 52184 0.67 0.727258
Target:  5'- cGGGGCGCGUCCUggacgugCUgGCGGUccuGGCGGa -3'
miRNA:   3'- cUCUUGUGUAGGA-------GGgCGCCG---CCGUC- -5'
5110 3' -58.5 NC_001798.1 + 57777 0.66 0.793722
Target:  5'- cGGAAacCACcgCCUCCCGCGGacaacuacaacaCGGgAGu -3'
miRNA:   3'- cUCUU--GUGuaGGAGGGCGCC------------GCCgUC- -5'
5110 3' -58.5 NC_001798.1 + 58628 0.66 0.784722
Target:  5'- cGGGGACAgG-CCuuggaaaagcugUCCC-CGGCGGCGGu -3'
miRNA:   3'- -CUCUUGUgUaGG------------AGGGcGCCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 60228 0.72 0.481232
Target:  5'- uGGAcgACGCGcCCUCCuCGCgGGCGGCAa -3'
miRNA:   3'- cUCU--UGUGUaGGAGG-GCG-CCGCCGUc -5'
5110 3' -58.5 NC_001798.1 + 60862 0.75 0.330078
Target:  5'- cGGGAuCGCGUCCUCCgaaggGgGGCGGCGGc -3'
miRNA:   3'- -CUCUuGUGUAGGAGGg----CgCCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 66743 0.66 0.810425
Target:  5'- cAGAACcggcgccACGUCCgCCUgggguGCGGCGGCGu -3'
miRNA:   3'- cUCUUG-------UGUAGGaGGG-----CGCCGCCGUc -5'
5110 3' -58.5 NC_001798.1 + 77176 0.73 0.415629
Target:  5'- cGGGAGCGCcgCCgucgcgacggcaagUCCCGCGGCGaCGGu -3'
miRNA:   3'- -CUCUUGUGuaGG--------------AGGGCGCCGCcGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.