miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5110 3' -58.5 NC_001798.1 + 85294 0.67 0.775589
Target:  5'- cGGGGGCcgGgGUCCgCCCGCGGCccgcccGCAGa -3'
miRNA:   3'- -CUCUUG--UgUAGGaGGGCGCCGc-----CGUC- -5'
5110 3' -58.5 NC_001798.1 + 139810 0.67 0.775589
Target:  5'- cGGGAAuCACGUCCaggCCCaGCuGgGGCAGc -3'
miRNA:   3'- -CUCUU-GUGUAGGa--GGG-CGcCgCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 14447 0.68 0.708658
Target:  5'- uGAGAccaaaacaacagGCACG-CC-CCC-CGGCGGCGGu -3'
miRNA:   3'- -CUCU------------UGUGUaGGaGGGcGCCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 135756 0.68 0.708658
Target:  5'- uGAG-ACGaAUCCUCCgGCGGcCGGCc- -3'
miRNA:   3'- -CUCuUGUgUAGGAGGgCGCC-GCCGuc -5'
5110 3' -58.5 NC_001798.1 + 154099 0.68 0.698774
Target:  5'- cGGGGCGCGgccggcgCCggggaCCC-CGGCGGCGGg -3'
miRNA:   3'- cUCUUGUGUa------GGa----GGGcGCCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 102620 0.68 0.698774
Target:  5'- cGGGGAucCACAaauaaCUCCCGUcgccgGGCGGCGGa -3'
miRNA:   3'- -CUCUU--GUGUag---GAGGGCG-----CCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 27042 0.68 0.708658
Target:  5'- cGGGcGGCACGU-CUCCCGCGcccGCGGgGGg -3'
miRNA:   3'- -CUC-UUGUGUAgGAGGGCGC---CGCCgUC- -5'
5110 3' -58.5 NC_001798.1 + 95204 0.68 0.708658
Target:  5'- cGGGAACugGgCCagCCUGCugGGCGGCAa -3'
miRNA:   3'- -CUCUUGugUaGGa-GGGCG--CCGCCGUc -5'
5110 3' -58.5 NC_001798.1 + 78381 0.68 0.708658
Target:  5'- cGAGGACGCGcuggUCgcgUgCGCGGCGGCGu -3'
miRNA:   3'- -CUCUUGUGUa---GGa--GgGCGCCGCCGUc -5'
5110 3' -58.5 NC_001798.1 + 90395 0.68 0.717501
Target:  5'- gGGGGGCGCGguugggCCggcgcguUCCCGCGGCcgggcuugaGGCGGu -3'
miRNA:   3'- -CUCUUGUGUa-----GG-------AGGGCGCCG---------CCGUC- -5'
5110 3' -58.5 NC_001798.1 + 149717 0.68 0.71848
Target:  5'- --uGGCACAcuUCCUcggccCCCGCGGCGcaGCAGc -3'
miRNA:   3'- cucUUGUGU--AGGA-----GGGCGCCGC--CGUC- -5'
5110 3' -58.5 NC_001798.1 + 9151 0.68 0.71848
Target:  5'- -cGGGCGCGgcgCCgCCCGCgccgGGgGGCAGg -3'
miRNA:   3'- cuCUUGUGUa--GGaGGGCG----CCgCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 12606 0.68 0.71848
Target:  5'- uGGGGGC-CAUCUgagCGCGGCGGCGu -3'
miRNA:   3'- -CUCUUGuGUAGGaggGCGCCGCCGUc -5'
5110 3' -58.5 NC_001798.1 + 28070 0.69 0.608372
Target:  5'- cGAGAGCGCGccggccgcguccUCgCUCCUGCGGCgcuGGCu- -3'
miRNA:   3'- -CUCUUGUGU------------AG-GAGGGCGCCG---CCGuc -5'
5110 3' -58.5 NC_001798.1 + 116333 0.69 0.618448
Target:  5'- gGGGGGCACGagCCcgUCUaCGCGGCGGCGu -3'
miRNA:   3'- -CUCUUGUGUa-GG--AGG-GCGCCGCCGUc -5'
5110 3' -58.5 NC_001798.1 + 1988 0.69 0.628535
Target:  5'- cGGGGGCGCgGUCCaguugCCCGCccaGGCGGCc- -3'
miRNA:   3'- -CUCUUGUG-UAGGa----GGGCG---CCGCCGuc -5'
5110 3' -58.5 NC_001798.1 + 123953 0.69 0.628535
Target:  5'- -uGGugGCA-CCUCCC-CGGCGGCc- -3'
miRNA:   3'- cuCUugUGUaGGAGGGcGCCGCCGuc -5'
5110 3' -58.5 NC_001798.1 + 48655 0.69 0.648708
Target:  5'- aAGGACACG-CCUCCCuuccgagcGCGGgGGaCGGg -3'
miRNA:   3'- cUCUUGUGUaGGAGGG--------CGCCgCC-GUC- -5'
5110 3' -58.5 NC_001798.1 + 153019 0.69 0.648708
Target:  5'- cGGGGCGgaGUCCgggCCCgcGCGGCGGCGc -3'
miRNA:   3'- cUCUUGUg-UAGGa--GGG--CGCCGCCGUc -5'
5110 3' -58.5 NC_001798.1 + 153647 0.69 0.658779
Target:  5'- aGGGGAgGCGUaCCuUCCCGCG-CGGCGc -3'
miRNA:   3'- -CUCUUgUGUA-GG-AGGGCGCcGCCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.