miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5110 3' -58.5 NC_001798.1 + 1988 0.69 0.628535
Target:  5'- cGGGGGCGCgGUCCaguugCCCGCccaGGCGGCc- -3'
miRNA:   3'- -CUCUUGUG-UAGGa----GGGCG---CCGCCGuc -5'
5110 3' -58.5 NC_001798.1 + 2193 0.66 0.793722
Target:  5'- --uGGCGCAUCCaggccgCCgCGCGGCGcaGCGGg -3'
miRNA:   3'- cucUUGUGUAGGa-----GG-GCGCCGC--CGUC- -5'
5110 3' -58.5 NC_001798.1 + 2384 0.74 0.360483
Target:  5'- cGGGGCGCAguaggCCUCCaggGCGGCGGCc- -3'
miRNA:   3'- cUCUUGUGUa----GGAGGg--CGCCGCCGuc -5'
5110 3' -58.5 NC_001798.1 + 2506 0.71 0.509624
Target:  5'- cGGGGCGCGg-CggCCGCGGCGGCGGc -3'
miRNA:   3'- cUCUUGUGUagGagGGCGCCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 2543 0.7 0.558385
Target:  5'- gGGGGGCGCggCC-CCCGCGGgaggGGCGGc -3'
miRNA:   3'- -CUCUUGUGuaGGaGGGCGCCg---CCGUC- -5'
5110 3' -58.5 NC_001798.1 + 2647 0.74 0.352702
Target:  5'- cGGGGcucuugcgcuuGCGCG-CCUCCCGCGGCgcggaGGCGGg -3'
miRNA:   3'- -CUCU-----------UGUGUaGGAGGGCGCCG-----CCGUC- -5'
5110 3' -58.5 NC_001798.1 + 2754 0.75 0.330078
Target:  5'- aAGAGCAgGUCCg-CgGCGGCGGCGGc -3'
miRNA:   3'- cUCUUGUgUAGGagGgCGCCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 2964 0.66 0.811288
Target:  5'- cGGGGCGCGUCggCgUGCGGCggGGCGGc -3'
miRNA:   3'- cUCUUGUGUAGgaGgGCGCCG--CCGUC- -5'
5110 3' -58.5 NC_001798.1 + 3082 0.7 0.548511
Target:  5'- --cAGCGCcUCCaggaUCCCGCGGCaGGCGGc -3'
miRNA:   3'- cucUUGUGuAGG----AGGGCGCCG-CCGUC- -5'
5110 3' -58.5 NC_001798.1 + 5376 0.77 0.24456
Target:  5'- ---cGCGCGUCCgcgUCCGUGGCGGCGGc -3'
miRNA:   3'- cucuUGUGUAGGa--GGGCGCCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 9151 0.68 0.71848
Target:  5'- -cGGGCGCGgcgCCgCCCGCgccgGGgGGCAGg -3'
miRNA:   3'- cuCUUGUGUa--GGaGGGCG----CCgCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 12606 0.68 0.71848
Target:  5'- uGGGGGC-CAUCUgagCGCGGCGGCGu -3'
miRNA:   3'- -CUCUUGuGUAGGaggGCGCCGCCGUc -5'
5110 3' -58.5 NC_001798.1 + 14447 0.68 0.708658
Target:  5'- uGAGAccaaaacaacagGCACG-CC-CCC-CGGCGGCGGu -3'
miRNA:   3'- -CUCU------------UGUGUaGGaGGGcGCCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 18270 0.71 0.538693
Target:  5'- cAGGuACGCAUCCU-CCGCGGgGGUAu -3'
miRNA:   3'- cUCU-UGUGUAGGAgGGCGCCgCCGUc -5'
5110 3' -58.5 NC_001798.1 + 23005 0.7 0.578274
Target:  5'- -cGGACgGCGUCgUCUCGCcGCGGCAGc -3'
miRNA:   3'- cuCUUG-UGUAGgAGGGCGcCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 23240 0.66 0.793722
Target:  5'- gGAGAcgACGUCCgcggUCCGCGG-GGCGu -3'
miRNA:   3'- -CUCUugUGUAGGa---GGGCGCCgCCGUc -5'
5110 3' -58.5 NC_001798.1 + 23656 0.75 0.322778
Target:  5'- uGGAGCGCcgCCgggCCCGCG-CGGCGGu -3'
miRNA:   3'- cUCUUGUGuaGGa--GGGCGCcGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 25151 0.66 0.811288
Target:  5'- -cGGcCGCc-CCUCCCGCGGgGGCc- -3'
miRNA:   3'- cuCUuGUGuaGGAGGGCGCCgCCGuc -5'
5110 3' -58.5 NC_001798.1 + 25641 0.67 0.756958
Target:  5'- -cGAGCGCggcgggcuGUCCUgCCUGCuGGCGGCc- -3'
miRNA:   3'- cuCUUGUG--------UAGGA-GGGCG-CCGCCGuc -5'
5110 3' -58.5 NC_001798.1 + 27042 0.68 0.708658
Target:  5'- cGGGcGGCACGU-CUCCCGCGcccGCGGgGGg -3'
miRNA:   3'- -CUC-UUGUGUAgGAGGGCGC---CGCCgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.