miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5110 3' -58.5 NC_001798.1 + 154099 0.68 0.698774
Target:  5'- cGGGGCGCGgccggcgCCggggaCCC-CGGCGGCGGg -3'
miRNA:   3'- cUCUUGUGUa------GGa----GGGcGCCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 153771 0.75 0.300234
Target:  5'- aGGGGGCGCugcggcccgcgcUCCUUgCGCGGCGGCGGc -3'
miRNA:   3'- -CUCUUGUGu-----------AGGAGgGCGCCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 153647 0.69 0.658779
Target:  5'- aGGGGAgGCGUaCCuUCCCGCG-CGGCGc -3'
miRNA:   3'- -CUCUUgUGUA-GG-AGGGCGCcGCCGUc -5'
5110 3' -58.5 NC_001798.1 + 153216 0.71 0.528936
Target:  5'- uAGAcCGCccgacggCCcgggCCCGCGGCGGCGGa -3'
miRNA:   3'- cUCUuGUGua-----GGa---GGGCGCCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 153019 0.69 0.648708
Target:  5'- cGGGGCGgaGUCCgggCCCgcGCGGCGGCGc -3'
miRNA:   3'- cUCUUGUg-UAGGa--GGG--CGCCGCCGUc -5'
5110 3' -58.5 NC_001798.1 + 150558 0.67 0.737898
Target:  5'- gGAGAGCGgc-CCggggCCCGCGG-GGCGGc -3'
miRNA:   3'- -CUCUUGUguaGGa---GGGCGCCgCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 149717 0.68 0.71848
Target:  5'- --uGGCACAcuUCCUcggccCCCGCGGCGcaGCAGc -3'
miRNA:   3'- cucUUGUGU--AGGA-----GGGCGCCGC--CGUC- -5'
5110 3' -58.5 NC_001798.1 + 147188 0.7 0.548511
Target:  5'- cGGAAgGCGUCC-CCCGCccGGCGGUc- -3'
miRNA:   3'- cUCUUgUGUAGGaGGGCG--CCGCCGuc -5'
5110 3' -58.5 NC_001798.1 + 144150 1.07 0.002244
Target:  5'- gGAGAACACAUCCUCCCGCGGCGGCAGc -3'
miRNA:   3'- -CUCUUGUGUAGGAGGGCGCCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 139810 0.67 0.775589
Target:  5'- cGGGAAuCACGUCCaggCCCaGCuGgGGCAGc -3'
miRNA:   3'- -CUCUU-GUGUAGGa--GGG-CGcCgCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 135756 0.68 0.708658
Target:  5'- uGAG-ACGaAUCCUCCgGCGGcCGGCc- -3'
miRNA:   3'- -CUCuUGUgUAGGAGGgCGCC-GCCGuc -5'
5110 3' -58.5 NC_001798.1 + 124260 0.66 0.784722
Target:  5'- -uGGACGCGguuaUCCUGCGGCaGGCGa -3'
miRNA:   3'- cuCUUGUGUagg-AGGGCGCCG-CCGUc -5'
5110 3' -58.5 NC_001798.1 + 123953 0.69 0.628535
Target:  5'- -uGGugGCA-CCUCCC-CGGCGGCc- -3'
miRNA:   3'- cuCUugUGUaGGAGGGcGCCGCCGuc -5'
5110 3' -58.5 NC_001798.1 + 121696 0.67 0.747477
Target:  5'- uGGGGGcCGCGg-CUCCCGCcgccgcgacggaGGCGGCGGc -3'
miRNA:   3'- -CUCUU-GUGUagGAGGGCG------------CCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 116333 0.69 0.618448
Target:  5'- gGGGGGCACGagCCcgUCUaCGCGGCGGCGu -3'
miRNA:   3'- -CUCUUGUGUa-GG--AGG-GCGCCGCCGUc -5'
5110 3' -58.5 NC_001798.1 + 105392 0.67 0.728229
Target:  5'- gGAGGGCgGCGUUCUCcagggccgCCGCGGCcGCGGu -3'
miRNA:   3'- -CUCUUG-UGUAGGAG--------GGCGCCGcCGUC- -5'
5110 3' -58.5 NC_001798.1 + 105175 0.72 0.453632
Target:  5'- -uGAAC-C-UCCaUCuCCGCGGCGGCGGg -3'
miRNA:   3'- cuCUUGuGuAGG-AG-GGCGCCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 102620 0.68 0.698774
Target:  5'- cGGGGAucCACAaauaaCUCCCGUcgccgGGCGGCGGa -3'
miRNA:   3'- -CUCUU--GUGUag---GAGGGCG-----CCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 102526 0.7 0.568308
Target:  5'- uAGGcCACcgUC-CCCGCGGCcGGCAGg -3'
miRNA:   3'- cUCUuGUGuaGGaGGGCGCCG-CCGUC- -5'
5110 3' -58.5 NC_001798.1 + 101842 0.72 0.462738
Target:  5'- gGGGGAgGCGUgggUCCCgGCGGCGGCGGa -3'
miRNA:   3'- -CUCUUgUGUAgg-AGGG-CGCCGCCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.