miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5110 3' -58.5 NC_001798.1 + 144150 1.07 0.002244
Target:  5'- gGAGAACACAUCCUCCCGCGGCGGCAGc -3'
miRNA:   3'- -CUCUUGUGUAGGAGGGCGCCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 139810 0.67 0.775589
Target:  5'- cGGGAAuCACGUCCaggCCCaGCuGgGGCAGc -3'
miRNA:   3'- -CUCUU-GUGUAGGa--GGG-CGcCgCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 85294 0.67 0.775589
Target:  5'- cGGGGGCcgGgGUCCgCCCGCGGCccgcccGCAGa -3'
miRNA:   3'- -CUCUUG--UgUAGGaGGGCGCCGc-----CGUC- -5'
5110 3' -58.5 NC_001798.1 + 85230 0.67 0.775589
Target:  5'- gGAGAGCgACGUcgcgcccgcCCcCCCGCGGcCGcGCGGg -3'
miRNA:   3'- -CUCUUG-UGUA---------GGaGGGCGCC-GC-CGUC- -5'
5110 3' -58.5 NC_001798.1 + 25641 0.67 0.756958
Target:  5'- -cGAGCGCggcgggcuGUCCUgCCUGCuGGCGGCc- -3'
miRNA:   3'- cuCUUGUG--------UAGGA-GGGCG-CCGCCGuc -5'
5110 3' -58.5 NC_001798.1 + 121696 0.67 0.747477
Target:  5'- uGGGGGcCGCGg-CUCCCGCcgccgcgacggaGGCGGCGGc -3'
miRNA:   3'- -CUCUU-GUGUagGAGGGCG------------CCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 51439 0.67 0.747477
Target:  5'- cGGGGCGCggCCUUCCGCGaCGGUcgAGa -3'
miRNA:   3'- cUCUUGUGuaGGAGGGCGCcGCCG--UC- -5'
5110 3' -58.5 NC_001798.1 + 150558 0.67 0.737898
Target:  5'- gGAGAGCGgc-CCggggCCCGCGG-GGCGGc -3'
miRNA:   3'- -CUCUUGUguaGGa---GGGCGCCgCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 105392 0.67 0.728229
Target:  5'- gGAGGGCgGCGUUCUCcagggccgCCGCGGCcGCGGu -3'
miRNA:   3'- -CUCUUG-UGUAGGAG--------GGCGCCGcCGUC- -5'
5110 3' -58.5 NC_001798.1 + 58628 0.66 0.784722
Target:  5'- cGGGGACAgG-CCuuggaaaagcugUCCC-CGGCGGCGGu -3'
miRNA:   3'- -CUCUUGUgUaGG------------AGGGcGCCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 124260 0.66 0.784722
Target:  5'- -uGGACGCGguuaUCCUGCGGCaGGCGa -3'
miRNA:   3'- cuCUUGUGUagg-AGGGCGCCG-CCGUc -5'
5110 3' -58.5 NC_001798.1 + 57777 0.66 0.793722
Target:  5'- cGGAAacCACcgCCUCCCGCGGacaacuacaacaCGGgAGu -3'
miRNA:   3'- cUCUU--GUGuaGGAGGGCGCC------------GCCgUC- -5'
5110 3' -58.5 NC_001798.1 + 27457 0.66 0.814728
Target:  5'- --cGGCACAgccugcuaguccccgUCCUgCCgCGCGGgGGCGGg -3'
miRNA:   3'- cucUUGUGU---------------AGGA-GG-GCGCCgCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 25151 0.66 0.811288
Target:  5'- -cGGcCGCc-CCUCCCGCGGgGGCc- -3'
miRNA:   3'- cuCUuGUGuaGGAGGGCGCCgCCGuc -5'
5110 3' -58.5 NC_001798.1 + 2964 0.66 0.811288
Target:  5'- cGGGGCGCGUCggCgUGCGGCggGGCGGc -3'
miRNA:   3'- cUCUUGUGUAGgaGgGCGCCG--CCGUC- -5'
5110 3' -58.5 NC_001798.1 + 27262 0.66 0.811288
Target:  5'- cGGGAcCGCAg-C-CCCGUGGCGcGCGGg -3'
miRNA:   3'- -CUCUuGUGUagGaGGGCGCCGC-CGUC- -5'
5110 3' -58.5 NC_001798.1 + 66743 0.66 0.810425
Target:  5'- cAGAACcggcgccACGUCCgCCUgggguGCGGCGGCGu -3'
miRNA:   3'- cUCUUG-------UGUAGGaGGG-----CGCCGCCGUc -5'
5110 3' -58.5 NC_001798.1 + 42740 0.66 0.801701
Target:  5'- cGAGGGCcCGUCg-CCCGCacagacgGGCGGCGc -3'
miRNA:   3'- -CUCUUGuGUAGgaGGGCG-------CCGCCGUc -5'
5110 3' -58.5 NC_001798.1 + 23240 0.66 0.793722
Target:  5'- gGAGAcgACGUCCgcggUCCGCGG-GGCGu -3'
miRNA:   3'- -CUCUugUGUAGGa---GGGCGCCgCCGUc -5'
5110 3' -58.5 NC_001798.1 + 2193 0.66 0.793722
Target:  5'- --uGGCGCAUCCaggccgCCgCGCGGCGcaGCGGg -3'
miRNA:   3'- cucUUGUGUAGGa-----GG-GCGCCGC--CGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.