miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5110 3' -58.5 NC_001798.1 + 96686 0.71 0.509624
Target:  5'- uGGAGCGCGUCCgggaguuuaUgGUGGCGGCGGu -3'
miRNA:   3'- cUCUUGUGUAGGag-------GgCGCCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 95204 0.68 0.708658
Target:  5'- cGGGAACugGgCCagCCUGCugGGCGGCAa -3'
miRNA:   3'- -CUCUUGugUaGGa-GGGCG--CCGCCGUc -5'
5110 3' -58.5 NC_001798.1 + 90395 0.68 0.717501
Target:  5'- gGGGGGCGCGguugggCCggcgcguUCCCGCGGCcgggcuugaGGCGGu -3'
miRNA:   3'- -CUCUUGUGUa-----GG-------AGGGCGCCG---------CCGUC- -5'
5110 3' -58.5 NC_001798.1 + 88058 0.72 0.453632
Target:  5'- gGGGGGCGggcuCGUCC-CCUGgGGCGGCGGc -3'
miRNA:   3'- -CUCUUGU----GUAGGaGGGCgCCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 87983 0.7 0.588278
Target:  5'- -uGGACGCG-CCUCCCGgGGgguCGGCAu -3'
miRNA:   3'- cuCUUGUGUaGGAGGGCgCC---GCCGUc -5'
5110 3' -58.5 NC_001798.1 + 85294 0.67 0.775589
Target:  5'- cGGGGGCcgGgGUCCgCCCGCGGCccgcccGCAGa -3'
miRNA:   3'- -CUCUUG--UgUAGGaGGGCGCCGc-----CGUC- -5'
5110 3' -58.5 NC_001798.1 + 85230 0.67 0.775589
Target:  5'- gGAGAGCgACGUcgcgcccgcCCcCCCGCGGcCGcGCGGg -3'
miRNA:   3'- -CUCUUG-UGUA---------GGaGGGCGCC-GC-CGUC- -5'
5110 3' -58.5 NC_001798.1 + 84496 0.75 0.330078
Target:  5'- -cGAACGCGUCC-CCCG-GGCGGCc- -3'
miRNA:   3'- cuCUUGUGUAGGaGGGCgCCGCCGuc -5'
5110 3' -58.5 NC_001798.1 + 78381 0.68 0.708658
Target:  5'- cGAGGACGCGcuggUCgcgUgCGCGGCGGCGu -3'
miRNA:   3'- -CUCUUGUGUa---GGa--GgGCGCCGCCGUc -5'
5110 3' -58.5 NC_001798.1 + 77176 0.73 0.415629
Target:  5'- cGGGAGCGCcgCCgucgcgacggcaagUCCCGCGGCGaCGGu -3'
miRNA:   3'- -CUCUUGUGuaGG--------------AGGGCGCCGCcGUC- -5'
5110 3' -58.5 NC_001798.1 + 66743 0.66 0.810425
Target:  5'- cAGAACcggcgccACGUCCgCCUgggguGCGGCGGCGu -3'
miRNA:   3'- cUCUUG-------UGUAGGaGGG-----CGCCGCCGUc -5'
5110 3' -58.5 NC_001798.1 + 60862 0.75 0.330078
Target:  5'- cGGGAuCGCGUCCUCCgaaggGgGGCGGCGGc -3'
miRNA:   3'- -CUCUuGUGUAGGAGGg----CgCCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 60228 0.72 0.481232
Target:  5'- uGGAcgACGCGcCCUCCuCGCgGGCGGCAa -3'
miRNA:   3'- cUCU--UGUGUaGGAGG-GCG-CCGCCGUc -5'
5110 3' -58.5 NC_001798.1 + 58628 0.66 0.784722
Target:  5'- cGGGGACAgG-CCuuggaaaagcugUCCC-CGGCGGCGGu -3'
miRNA:   3'- -CUCUUGUgUaGG------------AGGGcGCCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 57777 0.66 0.793722
Target:  5'- cGGAAacCACcgCCUCCCGCGGacaacuacaacaCGGgAGu -3'
miRNA:   3'- cUCUU--GUGuaGGAGGGCGCC------------GCCgUC- -5'
5110 3' -58.5 NC_001798.1 + 52184 0.67 0.727258
Target:  5'- cGGGGCGCGUCCUggacgugCUgGCGGUccuGGCGGa -3'
miRNA:   3'- cUCUUGUGUAGGA-------GGgCGCCG---CCGUC- -5'
5110 3' -58.5 NC_001798.1 + 51439 0.67 0.747477
Target:  5'- cGGGGCGCggCCUUCCGCGaCGGUcgAGa -3'
miRNA:   3'- cUCUUGUGuaGGAGGGCGCcGCCG--UC- -5'
5110 3' -58.5 NC_001798.1 + 51167 0.74 0.384537
Target:  5'- -cGAcGCGCGUCCgaggCCCG-GGCGGCGGc -3'
miRNA:   3'- cuCU-UGUGUAGGa---GGGCgCCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 49822 0.74 0.3597
Target:  5'- -cGAGCACcugaaCCUCCCgcuggugcgaaguGCGGCGGCGGa -3'
miRNA:   3'- cuCUUGUGua---GGAGGG-------------CGCCGCCGUC- -5'
5110 3' -58.5 NC_001798.1 + 48655 0.69 0.648708
Target:  5'- aAGGACACG-CCUCCCuuccgagcGCGGgGGaCGGg -3'
miRNA:   3'- cUCUUGUGUaGGAGGG--------CGCCgCC-GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.