Results 61 - 69 of 69 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 5110 | 3' | -58.5 | NC_001798.1 | + | 49822 | 0.74 | 0.3597 |
|
Target: 5'- -cGAGCACcugaaCCUCCCgcuggugcgaaguGCGGCGGCGGa -3' miRNA: 3'- cuCUUGUGua---GGAGGG-------------CGCCGCCGUC- -5' |
|||||||
| 5110 | 3' | -58.5 | NC_001798.1 | + | 2647 | 0.74 | 0.352702 |
|
Target: 5'- cGGGGcucuugcgcuuGCGCG-CCUCCCGCGGCgcggaGGCGGg -3' miRNA: 3'- -CUCU-----------UGUGUaGGAGGGCGCCG-----CCGUC- -5' |
|||||||
| 5110 | 3' | -58.5 | NC_001798.1 | + | 60862 | 0.75 | 0.330078 |
|
Target: 5'- cGGGAuCGCGUCCUCCgaaggGgGGCGGCGGc -3' miRNA: 3'- -CUCUuGUGUAGGAGGg----CgCCGCCGUC- -5' |
|||||||
| 5110 | 3' | -58.5 | NC_001798.1 | + | 2754 | 0.75 | 0.330078 |
|
Target: 5'- aAGAGCAgGUCCg-CgGCGGCGGCGGc -3' miRNA: 3'- cUCUUGUgUAGGagGgCGCCGCCGUC- -5' |
|||||||
| 5110 | 3' | -58.5 | NC_001798.1 | + | 84496 | 0.75 | 0.330078 |
|
Target: 5'- -cGAACGCGUCC-CCCG-GGCGGCc- -3' miRNA: 3'- cuCUUGUGUAGGaGGGCgCCGCCGuc -5' |
|||||||
| 5110 | 3' | -58.5 | NC_001798.1 | + | 23656 | 0.75 | 0.322778 |
|
Target: 5'- uGGAGCGCcgCCgggCCCGCG-CGGCGGu -3' miRNA: 3'- cUCUUGUGuaGGa--GGGCGCcGCCGUC- -5' |
|||||||
| 5110 | 3' | -58.5 | NC_001798.1 | + | 153771 | 0.75 | 0.300234 |
|
Target: 5'- aGGGGGCGCugcggcccgcgcUCCUUgCGCGGCGGCGGc -3' miRNA: 3'- -CUCUUGUGu-----------AGGAGgGCGCCGCCGUC- -5' |
|||||||
| 5110 | 3' | -58.5 | NC_001798.1 | + | 5376 | 0.77 | 0.24456 |
|
Target: 5'- ---cGCGCGUCCgcgUCCGUGGCGGCGGc -3' miRNA: 3'- cucuUGUGUAGGa--GGGCGCCGCCGUC- -5' |
|||||||
| 5110 | 3' | -58.5 | NC_001798.1 | + | 144150 | 1.07 | 0.002244 |
|
Target: 5'- gGAGAACACAUCCUCCCGCGGCGGCAGc -3' miRNA: 3'- -CUCUUGUGUAGGAGGGCGCCGCCGUC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home