miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5110 5' -55.5 NC_001798.1 + 144186 1.12 0.002213
Target:  5'- gGUCUGGCACCGACGGUCAUACUCCGCg -3'
miRNA:   3'- -CAGACCGUGGCUGCCAGUAUGAGGCG- -5'
5110 5' -55.5 NC_001798.1 + 56555 0.75 0.488991
Target:  5'- uGUCUGGgACgCGACGGcCAccuuCUCCGCc -3'
miRNA:   3'- -CAGACCgUG-GCUGCCaGUau--GAGGCG- -5'
5110 5' -55.5 NC_001798.1 + 4904 0.74 0.517909
Target:  5'- aUCcGGgGCCGcCGGUCGU-CUCCGCc -3'
miRNA:   3'- cAGaCCgUGGCuGCCAGUAuGAGGCG- -5'
5110 5' -55.5 NC_001798.1 + 73095 0.73 0.597833
Target:  5'- -cCUGGgucaGCCGACGGUgGUuccggACUCCGUg -3'
miRNA:   3'- caGACCg---UGGCUGCCAgUA-----UGAGGCG- -5'
5110 5' -55.5 NC_001798.1 + 25880 0.73 0.608005
Target:  5'- -aCUGGCccGCCGACGGgccCGUGgUCuCGCg -3'
miRNA:   3'- caGACCG--UGGCUGCCa--GUAUgAG-GCG- -5'
5110 5' -55.5 NC_001798.1 + 74405 0.7 0.729194
Target:  5'- --gUGGCGCCGGCGGaCcugACcgCCGCg -3'
miRNA:   3'- cagACCGUGGCUGCCaGua-UGa-GGCG- -5'
5110 5' -55.5 NC_001798.1 + 69302 0.7 0.74864
Target:  5'- ---gGGCGCCgggGACGGUCAgccCUcCCGCg -3'
miRNA:   3'- cagaCCGUGG---CUGCCAGUau-GA-GGCG- -5'
5110 5' -55.5 NC_001798.1 + 42998 0.7 0.74864
Target:  5'- aUCUGGCccCCGACGGcCAgg--CCGCc -3'
miRNA:   3'- cAGACCGu-GGCUGCCaGUaugaGGCG- -5'
5110 5' -55.5 NC_001798.1 + 46239 0.7 0.767679
Target:  5'- --gUGGCGCCguuggccggGACGGUCAcgGCUCgGUg -3'
miRNA:   3'- cagACCGUGG---------CUGCCAGUa-UGAGgCG- -5'
5110 5' -55.5 NC_001798.1 + 50110 0.7 0.777023
Target:  5'- --gUGGCGCCG-CGcauGUCGUuucuCUCCGCg -3'
miRNA:   3'- cagACCGUGGCuGC---CAGUAu---GAGGCG- -5'
5110 5' -55.5 NC_001798.1 + 9728 0.7 0.777023
Target:  5'- -gCUGGCGCUGGgGGagGUGCUguuccaccaCCGCg -3'
miRNA:   3'- caGACCGUGGCUgCCagUAUGA---------GGCG- -5'
5110 5' -55.5 NC_001798.1 + 76001 0.7 0.777023
Target:  5'- ---gGGCGCCGGCGGcagggcccCGUGC-CCGCc -3'
miRNA:   3'- cagaCCGUGGCUGCCa-------GUAUGaGGCG- -5'
5110 5' -55.5 NC_001798.1 + 4175 0.7 0.777023
Target:  5'- cGUCguccGCGCCGAgGGUCccGC-CCGCg -3'
miRNA:   3'- -CAGac--CGUGGCUgCCAGuaUGaGGCG- -5'
5110 5' -55.5 NC_001798.1 + 138667 0.69 0.786238
Target:  5'- --aUGuGCAC--GCGGUCGUAUUCCGCc -3'
miRNA:   3'- cagAC-CGUGgcUGCCAGUAUGAGGCG- -5'
5110 5' -55.5 NC_001798.1 + 153387 0.69 0.795316
Target:  5'- ---cGGCGCCGgaaccggucGCGGUCGgcccGCUCgCGCg -3'
miRNA:   3'- cagaCCGUGGC---------UGCCAGUa---UGAG-GCG- -5'
5110 5' -55.5 NC_001798.1 + 59828 0.69 0.804247
Target:  5'- uUCUggGGCGCCG-CGGUC--GC-CCGCg -3'
miRNA:   3'- cAGA--CCGUGGCuGCCAGuaUGaGGCG- -5'
5110 5' -55.5 NC_001798.1 + 79522 0.69 0.827564
Target:  5'- aUCUGcGCGCCGGCGGagacccggggccccUgGUGCUgCGUg -3'
miRNA:   3'- cAGAC-CGUGGCUGCC--------------AgUAUGAgGCG- -5'
5110 5' -55.5 NC_001798.1 + 24550 0.68 0.83834
Target:  5'- ---cGGCGCCGGCGGUgGUGg-CgGCg -3'
miRNA:   3'- cagaCCGUGGCUGCCAgUAUgaGgCG- -5'
5110 5' -55.5 NC_001798.1 + 148682 0.68 0.846417
Target:  5'- gGUCUGGCcgGCCaGACGuG-C-UGCUCUGCa -3'
miRNA:   3'- -CAGACCG--UGG-CUGC-CaGuAUGAGGCG- -5'
5110 5' -55.5 NC_001798.1 + 73196 0.68 0.846417
Target:  5'- ---aGGuCACCGACGG-CGUGUUUCGCg -3'
miRNA:   3'- cagaCC-GUGGCUGCCaGUAUGAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.