Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5110 | 5' | -55.5 | NC_001798.1 | + | 2470 | 0.66 | 0.936865 |
Target: 5'- gGUCggGGCccucggcggGCCGGCgGGUCAgcg-CCGCg -3' miRNA: 3'- -CAGa-CCG---------UGGCUG-CCAGUaugaGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 2773 | 0.68 | 0.86946 |
Target: 5'- ---cGGCGgCGGCGGagcUCAgcaggcgcggGCUCCGCg -3' miRNA: 3'- cagaCCGUgGCUGCC---AGUa---------UGAGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 4175 | 0.7 | 0.777023 |
Target: 5'- cGUCguccGCGCCGAgGGUCccGC-CCGCg -3' miRNA: 3'- -CAGac--CGUGGCUgCCAGuaUGaGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 4904 | 0.74 | 0.517909 |
Target: 5'- aUCcGGgGCCGcCGGUCGU-CUCCGCc -3' miRNA: 3'- cAGaCCgUGGCuGCCAGUAuGAGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 5181 | 0.66 | 0.931909 |
Target: 5'- -cCUGGCgGCCGcguCGGUagcCGcGCUCCGUg -3' miRNA: 3'- caGACCG-UGGCu--GCCA---GUaUGAGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 5727 | 0.66 | 0.936865 |
Target: 5'- -gCUGGCGCCcugcccggGGCccgcGUCAUcccgcGCUCCGCc -3' miRNA: 3'- caGACCGUGG--------CUGc---CAGUA-----UGAGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 9728 | 0.7 | 0.777023 |
Target: 5'- -gCUGGCGCUGGgGGagGUGCUguuccaccaCCGCg -3' miRNA: 3'- caGACCGUGGCUgCCagUAUGA---------GGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 15964 | 0.66 | 0.925111 |
Target: 5'- ---cGGCAgaccccgacgucuuCCGugGGUCGUGCcaUCCGa -3' miRNA: 3'- cagaCCGU--------------GGCugCCAGUAUG--AGGCg -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 24460 | 0.67 | 0.909712 |
Target: 5'- ---cGGCGCCG-CGGggGUGCUcgCCGCc -3' miRNA: 3'- cagaCCGUGGCuGCCagUAUGA--GGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 24550 | 0.68 | 0.83834 |
Target: 5'- ---cGGCGCCGGCGGUgGUGg-CgGCg -3' miRNA: 3'- cagaCCGUGGCUGCCAgUAUgaGgCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 24771 | 0.66 | 0.926715 |
Target: 5'- -cCUGGCugCGcgagcuGCGGuUCGUGCgcgaCGCg -3' miRNA: 3'- caGACCGugGC------UGCC-AGUAUGag--GCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 25880 | 0.73 | 0.608005 |
Target: 5'- -aCUGGCccGCCGACGGgccCGUGgUCuCGCg -3' miRNA: 3'- caGACCG--UGGCUGCCa--GUAUgAG-GCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 32449 | 0.67 | 0.883774 |
Target: 5'- -cCUGGCGCCuuacgugaacaaGACGGUCAcgggggacugccUGC-CCGUc -3' miRNA: 3'- caGACCGUGG------------CUGCCAGU------------AUGaGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 35452 | 0.67 | 0.883774 |
Target: 5'- -gCUGGCGCCG-CGGccCGUcuGCUggcCCGCg -3' miRNA: 3'- caGACCGUGGCuGCCa-GUA--UGA---GGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 42625 | 0.67 | 0.897201 |
Target: 5'- cGUCcgggagGGgGCCGugGGUCGUguccauggGgUCCGUg -3' miRNA: 3'- -CAGa-----CCgUGGCugCCAGUA--------UgAGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 42998 | 0.7 | 0.74864 |
Target: 5'- aUCUGGCccCCGACGGcCAgg--CCGCc -3' miRNA: 3'- cAGACCGu-GGCUGCCaGUaugaGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 43228 | 0.67 | 0.903573 |
Target: 5'- gGUUUGG-ACCGACGcGUCcUGCaugagagCCGCg -3' miRNA: 3'- -CAGACCgUGGCUGC-CAGuAUGa------GGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 46239 | 0.7 | 0.767679 |
Target: 5'- --gUGGCGCCguuggccggGACGGUCAcgGCUCgGUg -3' miRNA: 3'- cagACCGUGG---------CUGCCAGUa-UGAGgCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 50110 | 0.7 | 0.777023 |
Target: 5'- --gUGGCGCCG-CGcauGUCGUuucuCUCCGCg -3' miRNA: 3'- cagACCGUGGCuGC---CAGUAu---GAGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 56555 | 0.75 | 0.488991 |
Target: 5'- uGUCUGGgACgCGACGGcCAccuuCUCCGCc -3' miRNA: 3'- -CAGACCgUG-GCUGCCaGUau--GAGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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