miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5110 5' -55.5 NC_001798.1 + 2470 0.66 0.936865
Target:  5'- gGUCggGGCccucggcggGCCGGCgGGUCAgcg-CCGCg -3'
miRNA:   3'- -CAGa-CCG---------UGGCUG-CCAGUaugaGGCG- -5'
5110 5' -55.5 NC_001798.1 + 2773 0.68 0.86946
Target:  5'- ---cGGCGgCGGCGGagcUCAgcaggcgcggGCUCCGCg -3'
miRNA:   3'- cagaCCGUgGCUGCC---AGUa---------UGAGGCG- -5'
5110 5' -55.5 NC_001798.1 + 4175 0.7 0.777023
Target:  5'- cGUCguccGCGCCGAgGGUCccGC-CCGCg -3'
miRNA:   3'- -CAGac--CGUGGCUgCCAGuaUGaGGCG- -5'
5110 5' -55.5 NC_001798.1 + 4904 0.74 0.517909
Target:  5'- aUCcGGgGCCGcCGGUCGU-CUCCGCc -3'
miRNA:   3'- cAGaCCgUGGCuGCCAGUAuGAGGCG- -5'
5110 5' -55.5 NC_001798.1 + 5181 0.66 0.931909
Target:  5'- -cCUGGCgGCCGcguCGGUagcCGcGCUCCGUg -3'
miRNA:   3'- caGACCG-UGGCu--GCCA---GUaUGAGGCG- -5'
5110 5' -55.5 NC_001798.1 + 5727 0.66 0.936865
Target:  5'- -gCUGGCGCCcugcccggGGCccgcGUCAUcccgcGCUCCGCc -3'
miRNA:   3'- caGACCGUGG--------CUGc---CAGUA-----UGAGGCG- -5'
5110 5' -55.5 NC_001798.1 + 9728 0.7 0.777023
Target:  5'- -gCUGGCGCUGGgGGagGUGCUguuccaccaCCGCg -3'
miRNA:   3'- caGACCGUGGCUgCCagUAUGA---------GGCG- -5'
5110 5' -55.5 NC_001798.1 + 15964 0.66 0.925111
Target:  5'- ---cGGCAgaccccgacgucuuCCGugGGUCGUGCcaUCCGa -3'
miRNA:   3'- cagaCCGU--------------GGCugCCAGUAUG--AGGCg -5'
5110 5' -55.5 NC_001798.1 + 24460 0.67 0.909712
Target:  5'- ---cGGCGCCG-CGGggGUGCUcgCCGCc -3'
miRNA:   3'- cagaCCGUGGCuGCCagUAUGA--GGCG- -5'
5110 5' -55.5 NC_001798.1 + 24550 0.68 0.83834
Target:  5'- ---cGGCGCCGGCGGUgGUGg-CgGCg -3'
miRNA:   3'- cagaCCGUGGCUGCCAgUAUgaGgCG- -5'
5110 5' -55.5 NC_001798.1 + 24771 0.66 0.926715
Target:  5'- -cCUGGCugCGcgagcuGCGGuUCGUGCgcgaCGCg -3'
miRNA:   3'- caGACCGugGC------UGCC-AGUAUGag--GCG- -5'
5110 5' -55.5 NC_001798.1 + 25880 0.73 0.608005
Target:  5'- -aCUGGCccGCCGACGGgccCGUGgUCuCGCg -3'
miRNA:   3'- caGACCG--UGGCUGCCa--GUAUgAG-GCG- -5'
5110 5' -55.5 NC_001798.1 + 32449 0.67 0.883774
Target:  5'- -cCUGGCGCCuuacgugaacaaGACGGUCAcgggggacugccUGC-CCGUc -3'
miRNA:   3'- caGACCGUGG------------CUGCCAGU------------AUGaGGCG- -5'
5110 5' -55.5 NC_001798.1 + 35452 0.67 0.883774
Target:  5'- -gCUGGCGCCG-CGGccCGUcuGCUggcCCGCg -3'
miRNA:   3'- caGACCGUGGCuGCCa-GUA--UGA---GGCG- -5'
5110 5' -55.5 NC_001798.1 + 42625 0.67 0.897201
Target:  5'- cGUCcgggagGGgGCCGugGGUCGUguccauggGgUCCGUg -3'
miRNA:   3'- -CAGa-----CCgUGGCugCCAGUA--------UgAGGCG- -5'
5110 5' -55.5 NC_001798.1 + 42998 0.7 0.74864
Target:  5'- aUCUGGCccCCGACGGcCAgg--CCGCc -3'
miRNA:   3'- cAGACCGu-GGCUGCCaGUaugaGGCG- -5'
5110 5' -55.5 NC_001798.1 + 43228 0.67 0.903573
Target:  5'- gGUUUGG-ACCGACGcGUCcUGCaugagagCCGCg -3'
miRNA:   3'- -CAGACCgUGGCUGC-CAGuAUGa------GGCG- -5'
5110 5' -55.5 NC_001798.1 + 46239 0.7 0.767679
Target:  5'- --gUGGCGCCguuggccggGACGGUCAcgGCUCgGUg -3'
miRNA:   3'- cagACCGUGG---------CUGCCAGUa-UGAGgCG- -5'
5110 5' -55.5 NC_001798.1 + 50110 0.7 0.777023
Target:  5'- --gUGGCGCCG-CGcauGUCGUuucuCUCCGCg -3'
miRNA:   3'- cagACCGUGGCuGC---CAGUAu---GAGGCG- -5'
5110 5' -55.5 NC_001798.1 + 56555 0.75 0.488991
Target:  5'- uGUCUGGgACgCGACGGcCAccuuCUCCGCc -3'
miRNA:   3'- -CAGACCgUG-GCUGCCaGUau--GAGGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.