Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5110 | 5' | -55.5 | NC_001798.1 | + | 153387 | 0.69 | 0.795316 |
Target: 5'- ---cGGCGCCGgaaccggucGCGGUCGgcccGCUCgCGCg -3' miRNA: 3'- cagaCCGUGGC---------UGCCAGUa---UGAG-GCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 150206 | 0.68 | 0.86946 |
Target: 5'- ---cGGCACCGGgGGUguUGgUgCCGCg -3' miRNA: 3'- cagaCCGUGGCUgCCAguAUgA-GGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 148682 | 0.68 | 0.846417 |
Target: 5'- gGUCUGGCcgGCCaGACGuG-C-UGCUCUGCa -3' miRNA: 3'- -CAGACCG--UGG-CUGC-CaGuAUGAGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 147259 | 0.67 | 0.8906 |
Target: 5'- ----cGCGCCGGCGG-CGU-UUCCGCg -3' miRNA: 3'- cagacCGUGGCUGCCaGUAuGAGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 144186 | 1.12 | 0.002213 |
Target: 5'- gGUCUGGCACCGACGGUCAUACUCCGCg -3' miRNA: 3'- -CAGACCGUGGCUGCCAGUAUGAGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 143109 | 0.67 | 0.876726 |
Target: 5'- aUgUGcGUugCGGCGGU---GCUCCGCg -3' miRNA: 3'- cAgAC-CGugGCUGCCAguaUGAGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 138667 | 0.69 | 0.786238 |
Target: 5'- --aUGuGCAC--GCGGUCGUAUUCCGCc -3' miRNA: 3'- cagAC-CGUGgcUGCCAGUAUGAGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 119426 | 0.67 | 0.889928 |
Target: 5'- -cCUGGCcCCGGCGGUUcggguguGUACguucgacggcgCCGCc -3' miRNA: 3'- caGACCGuGGCUGCCAG-------UAUGa----------GGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 116759 | 0.66 | 0.921284 |
Target: 5'- --aUGGCcgacGCaCGACGGcgCugcuGUGCUCCGCg -3' miRNA: 3'- cagACCG----UG-GCUGCCa-G----UAUGAGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 113946 | 0.67 | 0.883774 |
Target: 5'- uUUUGGCGgcCCGugGGUUGUuagucGCgUCCGCc -3' miRNA: 3'- cAGACCGU--GGCugCCAGUA-----UG-AGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 110887 | 0.66 | 0.921284 |
Target: 5'- cGUCcaGGUAcCCGGCGGUucgCGUGCggccagCCGCc -3' miRNA: 3'- -CAGa-CCGU-GGCUGCCA---GUAUGa-----GGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 103312 | 0.67 | 0.8906 |
Target: 5'- ---cGGCGCUGGCGGcCGUcucgaggacgcGCUCCaGCu -3' miRNA: 3'- cagaCCGUGGCUGCCaGUA-----------UGAGG-CG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 102791 | 0.66 | 0.936865 |
Target: 5'- uGUCaUGGCAcCCGGggcgcCGGUUuuAUAC-CCGCg -3' miRNA: 3'- -CAG-ACCGU-GGCU-----GCCAG--UAUGaGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 102275 | 0.66 | 0.915616 |
Target: 5'- gGUCcGGCucgucacgGCCG-CaGUCGUACUCCGg -3' miRNA: 3'- -CAGaCCG--------UGGCuGcCAGUAUGAGGCg -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 97127 | 0.67 | 0.903573 |
Target: 5'- -gCUGGCGuCCGGCGaUCGcGC-CCGCc -3' miRNA: 3'- caGACCGU-GGCUGCcAGUaUGaGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 93280 | 0.66 | 0.931909 |
Target: 5'- ---cGGCGCCGuCGGggCGUACcuggcgcgcgCCGCg -3' miRNA: 3'- cagaCCGUGGCuGCCa-GUAUGa---------GGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 91379 | 0.66 | 0.926715 |
Target: 5'- ---cGGCacaaaacaucGCCGcCGGUCGUugUCCuGCu -3' miRNA: 3'- cagaCCG----------UGGCuGCCAGUAugAGG-CG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 79735 | 0.66 | 0.921284 |
Target: 5'- ---cGGCcCCGACGGUCAcggccauguacgUGCUgaCCGUc -3' miRNA: 3'- cagaCCGuGGCUGCCAGU------------AUGA--GGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 79522 | 0.69 | 0.827564 |
Target: 5'- aUCUGcGCGCCGGCGGagacccggggccccUgGUGCUgCGUg -3' miRNA: 3'- cAGAC-CGUGGCUGCC--------------AgUAUGAgGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 76001 | 0.7 | 0.777023 |
Target: 5'- ---gGGCGCCGGCGGcagggcccCGUGC-CCGCc -3' miRNA: 3'- cagaCCGUGGCUGCCa-------GUAUGaGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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