Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5110 | 5' | -55.5 | NC_001798.1 | + | 32449 | 0.67 | 0.883774 |
Target: 5'- -cCUGGCGCCuuacgugaacaaGACGGUCAcgggggacugccUGC-CCGUc -3' miRNA: 3'- caGACCGUGG------------CUGCCAGU------------AUGaGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 35452 | 0.67 | 0.883774 |
Target: 5'- -gCUGGCGCCG-CGGccCGUcuGCUggcCCGCg -3' miRNA: 3'- caGACCGUGGCuGCCa-GUA--UGA---GGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 113946 | 0.67 | 0.883774 |
Target: 5'- uUUUGGCGgcCCGugGGUUGUuagucGCgUCCGCc -3' miRNA: 3'- cAGACCGU--GGCugCCAGUA-----UG-AGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 143109 | 0.67 | 0.876726 |
Target: 5'- aUgUGcGUugCGGCGGU---GCUCCGCg -3' miRNA: 3'- cAgAC-CGugGCUGCCAguaUGAGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 2773 | 0.68 | 0.86946 |
Target: 5'- ---cGGCGgCGGCGGagcUCAgcaggcgcggGCUCCGCg -3' miRNA: 3'- cagaCCGUgGCUGCC---AGUa---------UGAGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 150206 | 0.68 | 0.86946 |
Target: 5'- ---cGGCACCGGgGGUguUGgUgCCGCg -3' miRNA: 3'- cagaCCGUGGCUgCCAguAUgA-GGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 61206 | 0.68 | 0.861983 |
Target: 5'- ---cGcGCGCCGGCGGUUGcACcaaUCCGCa -3' miRNA: 3'- cagaC-CGUGGCUGCCAGUaUG---AGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 148682 | 0.68 | 0.846417 |
Target: 5'- gGUCUGGCcgGCCaGACGuG-C-UGCUCUGCa -3' miRNA: 3'- -CAGACCG--UGG-CUGC-CaGuAUGAGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 73196 | 0.68 | 0.846417 |
Target: 5'- ---aGGuCACCGACGG-CGUGUUUCGCg -3' miRNA: 3'- cagaCC-GUGGCUGCCaGUAUGAGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 24550 | 0.68 | 0.83834 |
Target: 5'- ---cGGCGCCGGCGGUgGUGg-CgGCg -3' miRNA: 3'- cagaCCGUGGCUGCCAgUAUgaGgCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 79522 | 0.69 | 0.827564 |
Target: 5'- aUCUGcGCGCCGGCGGagacccggggccccUgGUGCUgCGUg -3' miRNA: 3'- cAGAC-CGUGGCUGCC--------------AgUAUGAgGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 59828 | 0.69 | 0.804247 |
Target: 5'- uUCUggGGCGCCG-CGGUC--GC-CCGCg -3' miRNA: 3'- cAGA--CCGUGGCuGCCAGuaUGaGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 153387 | 0.69 | 0.795316 |
Target: 5'- ---cGGCGCCGgaaccggucGCGGUCGgcccGCUCgCGCg -3' miRNA: 3'- cagaCCGUGGC---------UGCCAGUa---UGAG-GCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 138667 | 0.69 | 0.786238 |
Target: 5'- --aUGuGCAC--GCGGUCGUAUUCCGCc -3' miRNA: 3'- cagAC-CGUGgcUGCCAGUAUGAGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 50110 | 0.7 | 0.777023 |
Target: 5'- --gUGGCGCCG-CGcauGUCGUuucuCUCCGCg -3' miRNA: 3'- cagACCGUGGCuGC---CAGUAu---GAGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 76001 | 0.7 | 0.777023 |
Target: 5'- ---gGGCGCCGGCGGcagggcccCGUGC-CCGCc -3' miRNA: 3'- cagaCCGUGGCUGCCa-------GUAUGaGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 4175 | 0.7 | 0.777023 |
Target: 5'- cGUCguccGCGCCGAgGGUCccGC-CCGCg -3' miRNA: 3'- -CAGac--CGUGGCUgCCAGuaUGaGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 9728 | 0.7 | 0.777023 |
Target: 5'- -gCUGGCGCUGGgGGagGUGCUguuccaccaCCGCg -3' miRNA: 3'- caGACCGUGGCUgCCagUAUGA---------GGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 46239 | 0.7 | 0.767679 |
Target: 5'- --gUGGCGCCguuggccggGACGGUCAcgGCUCgGUg -3' miRNA: 3'- cagACCGUGG---------CUGCCAGUa-UGAGgCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 69302 | 0.7 | 0.74864 |
Target: 5'- ---gGGCGCCgggGACGGUCAgccCUcCCGCg -3' miRNA: 3'- cagaCCGUGG---CUGCCAGUau-GA-GGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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