Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5110 | 5' | -55.5 | NC_001798.1 | + | 69302 | 0.7 | 0.74864 |
Target: 5'- ---gGGCGCCgggGACGGUCAgccCUcCCGCg -3' miRNA: 3'- cagaCCGUGG---CUGCCAGUau-GA-GGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 74405 | 0.7 | 0.729194 |
Target: 5'- --gUGGCGCCGGCGGaCcugACcgCCGCg -3' miRNA: 3'- cagACCGUGGCUGCCaGua-UGa-GGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 25880 | 0.73 | 0.608005 |
Target: 5'- -aCUGGCccGCCGACGGgccCGUGgUCuCGCg -3' miRNA: 3'- caGACCG--UGGCUGCCa--GUAUgAG-GCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 73095 | 0.73 | 0.597833 |
Target: 5'- -cCUGGgucaGCCGACGGUgGUuccggACUCCGUg -3' miRNA: 3'- caGACCg---UGGCUGCCAgUA-----UGAGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 4904 | 0.74 | 0.517909 |
Target: 5'- aUCcGGgGCCGcCGGUCGU-CUCCGCc -3' miRNA: 3'- cAGaCCgUGGCuGCCAGUAuGAGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 56555 | 0.75 | 0.488991 |
Target: 5'- uGUCUGGgACgCGACGGcCAccuuCUCCGCc -3' miRNA: 3'- -CAGACCgUG-GCUGCCaGUau--GAGGCG- -5' |
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5110 | 5' | -55.5 | NC_001798.1 | + | 144186 | 1.12 | 0.002213 |
Target: 5'- gGUCUGGCACCGACGGUCAUACUCCGCg -3' miRNA: 3'- -CAGACCGUGGCUGCCAGUAUGAGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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