Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 5110 | 5' | -55.5 | NC_001798.1 | + | 138667 | 0.69 | 0.786238 |
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Target: 5'- --aUGuGCAC--GCGGUCGUAUUCCGCc -3' miRNA: 3'- cagAC-CGUGgcUGCCAGUAUGAGGCG- -5' |
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| 5110 | 5' | -55.5 | NC_001798.1 | + | 143109 | 0.67 | 0.876726 |
|
Target: 5'- aUgUGcGUugCGGCGGU---GCUCCGCg -3' miRNA: 3'- cAgAC-CGugGCUGCCAguaUGAGGCG- -5' |
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| 5110 | 5' | -55.5 | NC_001798.1 | + | 144186 | 1.12 | 0.002213 |
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Target: 5'- gGUCUGGCACCGACGGUCAUACUCCGCg -3' miRNA: 3'- -CAGACCGUGGCUGCCAGUAUGAGGCG- -5' |
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| 5110 | 5' | -55.5 | NC_001798.1 | + | 147259 | 0.67 | 0.8906 |
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Target: 5'- ----cGCGCCGGCGG-CGU-UUCCGCg -3' miRNA: 3'- cagacCGUGGCUGCCaGUAuGAGGCG- -5' |
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| 5110 | 5' | -55.5 | NC_001798.1 | + | 148682 | 0.68 | 0.846417 |
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Target: 5'- gGUCUGGCcgGCCaGACGuG-C-UGCUCUGCa -3' miRNA: 3'- -CAGACCG--UGG-CUGC-CaGuAUGAGGCG- -5' |
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| 5110 | 5' | -55.5 | NC_001798.1 | + | 150206 | 0.68 | 0.86946 |
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Target: 5'- ---cGGCACCGGgGGUguUGgUgCCGCg -3' miRNA: 3'- cagaCCGUGGCUgCCAguAUgA-GGCG- -5' |
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| 5110 | 5' | -55.5 | NC_001798.1 | + | 153387 | 0.69 | 0.795316 |
|
Target: 5'- ---cGGCGCCGgaaccggucGCGGUCGgcccGCUCgCGCg -3' miRNA: 3'- cagaCCGUGGC---------UGCCAGUa---UGAG-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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