Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 5110 | 5' | -55.5 | NC_001798.1 | + | 60154 | 0.66 | 0.926715 |
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Target: 5'- cGUCuUGGCGuuGGCGGcCGcuugGC-CCGCc -3' miRNA: 3'- -CAG-ACCGUggCUGCCaGUa---UGaGGCG- -5' |
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| 5110 | 5' | -55.5 | NC_001798.1 | + | 24771 | 0.66 | 0.926715 |
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Target: 5'- -cCUGGCugCGcgagcuGCGGuUCGUGCgcgaCGCg -3' miRNA: 3'- caGACCGugGC------UGCC-AGUAUGag--GCG- -5' |
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| 5110 | 5' | -55.5 | NC_001798.1 | + | 93280 | 0.66 | 0.931909 |
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Target: 5'- ---cGGCGCCGuCGGggCGUACcuggcgcgcgCCGCg -3' miRNA: 3'- cagaCCGUGGCuGCCa-GUAUGa---------GGCG- -5' |
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| 5110 | 5' | -55.5 | NC_001798.1 | + | 5181 | 0.66 | 0.931909 |
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Target: 5'- -cCUGGCgGCCGcguCGGUagcCGcGCUCCGUg -3' miRNA: 3'- caGACCG-UGGCu--GCCA---GUaUGAGGCG- -5' |
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| 5110 | 5' | -55.5 | NC_001798.1 | + | 5727 | 0.66 | 0.936865 |
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Target: 5'- -gCUGGCGCCcugcccggGGCccgcGUCAUcccgcGCUCCGCc -3' miRNA: 3'- caGACCGUGG--------CUGc---CAGUA-----UGAGGCG- -5' |
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| 5110 | 5' | -55.5 | NC_001798.1 | + | 102791 | 0.66 | 0.936865 |
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Target: 5'- uGUCaUGGCAcCCGGggcgcCGGUUuuAUAC-CCGCg -3' miRNA: 3'- -CAG-ACCGU-GGCU-----GCCAG--UAUGaGGCG- -5' |
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| 5110 | 5' | -55.5 | NC_001798.1 | + | 2470 | 0.66 | 0.936865 |
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Target: 5'- gGUCggGGCccucggcggGCCGGCgGGUCAgcg-CCGCg -3' miRNA: 3'- -CAGa-CCG---------UGGCUG-CCAGUaugaGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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