Results 41 - 60 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5111 | 3' | -62.8 | NC_001798.1 | + | 3810 | 0.66 | 0.662268 |
Target: 5'- aCCGGGCCcgcgccuccuccGccucggGCGCCccccagaGGCCGGGgcGGc -3' miRNA: 3'- -GGUCCGG------------Ca-----CGCGGa------CCGGCCCuaCC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 32307 | 0.66 | 0.662268 |
Target: 5'- cCCGcGCUGcUGCGCCgcgggGGCCGaGGAa-- -3' miRNA: 3'- -GGUcCGGC-ACGCGGa----CCGGC-CCUacc -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 40494 | 0.66 | 0.662268 |
Target: 5'- gCCu-GCC-UGUGCUgGGCCGGGGgagGGg -3' miRNA: 3'- -GGucCGGcACGCGGaCCGGCCCUa--CC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 122212 | 0.66 | 0.662268 |
Target: 5'- gCuGGUCGaGUGgCUGGaCCGcGGGUGGg -3' miRNA: 3'- gGuCCGGCaCGCgGACC-GGC-CCUACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 134971 | 0.66 | 0.662268 |
Target: 5'- cCCAuGCCGcgugccuggGgGCCUGGCCcGcGGUGGg -3' miRNA: 3'- -GGUcCGGCa--------CgCGGACCGGcC-CUACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 39532 | 0.66 | 0.642947 |
Target: 5'- uCCGcGCC--GCGCCUcGCCGuGGGUGGc -3' miRNA: 3'- -GGUcCGGcaCGCGGAcCGGC-CCUACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 113128 | 0.66 | 0.642947 |
Target: 5'- aCgAGGCC--GCGUgUGGCgGGGA-GGa -3' miRNA: 3'- -GgUCCGGcaCGCGgACCGgCCCUaCC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 96335 | 0.67 | 0.594631 |
Target: 5'- uCCAGGUgcgCGUGCugcggcggcaCCUgcGGCCGGGGcUGGa -3' miRNA: 3'- -GGUCCG---GCACGc---------GGA--CCGGCCCU-ACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 148083 | 0.67 | 0.594631 |
Target: 5'- aCGGGCCGgGgGCCggGGCCgcuaGGGAa-- -3' miRNA: 3'- gGUCCGGCaCgCGGa-CCGG----CCCUacc -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 15268 | 0.67 | 0.60427 |
Target: 5'- aCGGGCgGUGCcCCgGGuuCCGGGcGUGGc -3' miRNA: 3'- gGUCCGgCACGcGGaCC--GGCCC-UACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 78122 | 0.67 | 0.60427 |
Target: 5'- aCgAGGCCGUgggGCGCCUGGC--GGAc-- -3' miRNA: 3'- -GgUCCGGCA---CGCGGACCGgcCCUacc -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 132207 | 0.66 | 0.613927 |
Target: 5'- -gGGaGCUGgaggcGCGCCUGGCCGGcGGa-- -3' miRNA: 3'- ggUC-CGGCa----CGCGGACCGGCC-CUacc -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 2239 | 0.66 | 0.621663 |
Target: 5'- gCGGGCCGaaggcggcgggcGCGCC--GCCGGGGggcgGGg -3' miRNA: 3'- gGUCCGGCa-----------CGCGGacCGGCCCUa---CC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 75434 | 0.66 | 0.633273 |
Target: 5'- aCgGGGCCcgcaCGCauacgcaGGCCGGGGUGGc -3' miRNA: 3'- -GgUCCGGcac-GCGga-----CCGGCCCUACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 149150 | 0.66 | 0.633273 |
Target: 5'- cCCcuGCCcccgagGCGCCUcGGCCGGugguccGGUGGg -3' miRNA: 3'- -GGucCGGca----CGCGGA-CCGGCC------CUACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 4352 | 0.66 | 0.633273 |
Target: 5'- --cGGCCGaGCGCC-GGCgGGGGg-- -3' miRNA: 3'- gguCCGGCaCGCGGaCCGgCCCUacc -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 76864 | 0.66 | 0.640046 |
Target: 5'- uCC-GGCCGUGCuggcgacccugcggGCCUcccuGCCcgcGGGGUGGa -3' miRNA: 3'- -GGuCCGGCACG--------------CGGAc---CGG---CCCUACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 107642 | 0.66 | 0.642947 |
Target: 5'- gUCGGGUgucgagacgcccUGuUGCGCCUcaccGCCGGGAUGa -3' miRNA: 3'- -GGUCCG------------GC-ACGCGGAc---CGGCCCUACc -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 6343 | 0.66 | 0.642947 |
Target: 5'- aCGGGCCGggGgGaCgGGCCGGGG-GGn -3' miRNA: 3'- gGUCCGGCa-CgCgGaCCGGCCCUaCC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 24663 | 0.66 | 0.642947 |
Target: 5'- aCCuggcGGCCGUGCcggGgCUGGCCGGa---- -3' miRNA: 3'- -GGu---CCGGCACG---CgGACCGGCCcuacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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