miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5111 3' -62.8 NC_001798.1 + 32883 0.69 0.438639
Target:  5'- aCCAccGGCCGagGCGCCUcgggGGCaggGGGAggUGGg -3'
miRNA:   3'- -GGU--CCGGCa-CGCGGA----CCGg--CCCU--ACC- -5'
5111 3' -62.8 NC_001798.1 + 33395 0.71 0.373637
Target:  5'- gCAGGagUGggaggGCGCCUGGCuCGGGGaGGg -3'
miRNA:   3'- gGUCCg-GCa----CGCGGACCG-GCCCUaCC- -5'
5111 3' -62.8 NC_001798.1 + 34841 0.72 0.329362
Target:  5'- cCCGGGCCGgacCGCCgGGCgGGGGa-- -3'
miRNA:   3'- -GGUCCGGCac-GCGGaCCGgCCCUacc -5'
5111 3' -62.8 NC_001798.1 + 34876 0.67 0.593668
Target:  5'- cCCGGcGCCGgGCGgCUacccgggacccccGGCCGGGAa-- -3'
miRNA:   3'- -GGUC-CGGCaCGCgGA-------------CCGGCCCUacc -5'
5111 3' -62.8 NC_001798.1 + 36149 0.68 0.491403
Target:  5'- -gGGGCgCG-GCGgC-GGUCGGGGUGGg -3'
miRNA:   3'- ggUCCG-GCaCGCgGaCCGGCCCUACC- -5'
5111 3' -62.8 NC_001798.1 + 36314 0.68 0.528158
Target:  5'- gCGGGgCGcGgGCCggGGCCGGGGcucgcUGGu -3'
miRNA:   3'- gGUCCgGCaCgCGGa-CCGGCCCU-----ACC- -5'
5111 3' -62.8 NC_001798.1 + 36512 0.76 0.178307
Target:  5'- gCCGGGCgGggGCGCgCggcGGCCGGGcgGGg -3'
miRNA:   3'- -GGUCCGgCa-CGCG-Ga--CCGGCCCuaCC- -5'
5111 3' -62.8 NC_001798.1 + 36554 0.76 0.178307
Target:  5'- gCCGGGCgGggGCGCgCggcGGCCGGGcgGGg -3'
miRNA:   3'- -GGUCCGgCa-CGCG-Ga--CCGGCCCuaCC- -5'
5111 3' -62.8 NC_001798.1 + 36596 0.76 0.178307
Target:  5'- gCCGGGCgGggGCGCgCggcGGCCGGGcgGGg -3'
miRNA:   3'- -GGUCCGgCa-CGCG-Ga--CCGGCCCuaCC- -5'
5111 3' -62.8 NC_001798.1 + 39532 0.66 0.642947
Target:  5'- uCCGcGCC--GCGCCUcGCCGuGGGUGGc -3'
miRNA:   3'- -GGUcCGGcaCGCGGAcCGGC-CCUACC- -5'
5111 3' -62.8 NC_001798.1 + 39560 0.67 0.556378
Target:  5'- cCgGGGCCGUccguccGCGCCgacgCGGGGUGGc -3'
miRNA:   3'- -GgUCCGGCA------CGCGGaccgGCCCUACC- -5'
5111 3' -62.8 NC_001798.1 + 40114 0.68 0.537509
Target:  5'- gCCAuGuuGUagGuCGCCggGGCUGGGAUGGc -3'
miRNA:   3'- -GGUcCggCA--C-GCGGa-CCGGCCCUACC- -5'
5111 3' -62.8 NC_001798.1 + 40494 0.66 0.662268
Target:  5'- gCCu-GCC-UGUGCUgGGCCGGGGgagGGg -3'
miRNA:   3'- -GGucCGGcACGCGGaCCGGCCCUa--CC- -5'
5111 3' -62.8 NC_001798.1 + 41366 0.7 0.397241
Target:  5'- aCCcGGCgGcucaugGCGCCggggaUGGCCGGGAgGGa -3'
miRNA:   3'- -GGuCCGgCa-----CGCGG-----ACCGGCCCUaCC- -5'
5111 3' -62.8 NC_001798.1 + 43643 0.7 0.388475
Target:  5'- cCCAGGggcgagggcugcuCCGUGCugGCCgcggGGCUGGGGucgUGGg -3'
miRNA:   3'- -GGUCC-------------GGCACG--CGGa---CCGGCCCU---ACC- -5'
5111 3' -62.8 NC_001798.1 + 44383 0.67 0.556378
Target:  5'- uCCAGaguuGCUGUGaCGUg-GGCCGGGAgcaaUGGg -3'
miRNA:   3'- -GGUC----CGGCAC-GCGgaCCGGCCCU----ACC- -5'
5111 3' -62.8 NC_001798.1 + 44872 0.72 0.30872
Target:  5'- gCAGaGCCGcGCGCgUGuuCCGGGAUGGc -3'
miRNA:   3'- gGUC-CGGCaCGCGgACc-GGCCCUACC- -5'
5111 3' -62.8 NC_001798.1 + 46226 0.71 0.343679
Target:  5'- --cGGCUGUaugaccgugGCGCCguUGGCCGGGAcGGu -3'
miRNA:   3'- gguCCGGCA---------CGCGG--ACCGGCCCUaCC- -5'
5111 3' -62.8 NC_001798.1 + 52564 0.69 0.447212
Target:  5'- --cGGCUGcUGgGCCUGGCCGacacGGUGGu -3'
miRNA:   3'- gguCCGGC-ACgCGGACCGGCc---CUACC- -5'
5111 3' -62.8 NC_001798.1 + 53989 0.68 0.536572
Target:  5'- cCUGGGCCaccugacGCGCCUGGCCcaccuguGGGAgaccGGc -3'
miRNA:   3'- -GGUCCGGca-----CGCGGACCGG-------CCCUa---CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.