miRNA display CGI


Results 61 - 80 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5111 3' -62.8 NC_001798.1 + 56940 0.68 0.52909
Target:  5'- --cGGCCGUGCacgucgccuuaaacGgCUGGCCcuccagcaccgcgugGGGGUGGa -3'
miRNA:   3'- gguCCGGCACG--------------CgGACCGG---------------CCCUACC- -5'
5111 3' -62.8 NC_001798.1 + 57159 0.68 0.518867
Target:  5'- gCGGGCUG-GCGCCcgGGCCGGc---- -3'
miRNA:   3'- gGUCCGGCaCGCGGa-CCGGCCcuacc -5'
5111 3' -62.8 NC_001798.1 + 66833 0.77 0.162032
Target:  5'- cCCGGuGCCG-GCGCCcaGGCCGGGGUuuccGGg -3'
miRNA:   3'- -GGUC-CGGCaCGCGGa-CCGGCCCUA----CC- -5'
5111 3' -62.8 NC_001798.1 + 68729 0.78 0.140124
Target:  5'- uCCAGGUCcacgaagGCGCa-GGCCGGGAUGGu -3'
miRNA:   3'- -GGUCCGGca-----CGCGgaCCGGCCCUACC- -5'
5111 3' -62.8 NC_001798.1 + 69134 0.67 0.563027
Target:  5'- cCCAGGCCucgGCcagucgcucggucuGCC-GGCCGGGcgGa -3'
miRNA:   3'- -GGUCCGGca-CG--------------CGGaCCGGCCCuaCc -5'
5111 3' -62.8 NC_001798.1 + 72150 0.69 0.473472
Target:  5'- cCCGGGCCG-GCGUCgGGCCcacgaugcaGAUGGc -3'
miRNA:   3'- -GGUCCGGCaCGCGGaCCGGcc-------CUACC- -5'
5111 3' -62.8 NC_001798.1 + 75434 0.66 0.633273
Target:  5'- aCgGGGCCcgcaCGCauacgcaGGCCGGGGUGGc -3'
miRNA:   3'- -GgUCCGGcac-GCGga-----CCGGCCCUACC- -5'
5111 3' -62.8 NC_001798.1 + 76864 0.66 0.640046
Target:  5'- uCC-GGCCGUGCuggcgacccugcggGCCUcccuGCCcgcGGGGUGGa -3'
miRNA:   3'- -GGuCCGGCACG--------------CGGAc---CGG---CCCUACC- -5'
5111 3' -62.8 NC_001798.1 + 77436 0.73 0.289081
Target:  5'- gCCGGGCC-UGCGCCcaGCCGGaGggGGa -3'
miRNA:   3'- -GGUCCGGcACGCGGacCGGCC-CuaCC- -5'
5111 3' -62.8 NC_001798.1 + 78122 0.67 0.60427
Target:  5'- aCgAGGCCGUgggGCGCCUGGC--GGAc-- -3'
miRNA:   3'- -GgUCCGGCA---CGCGGACCGgcCCUacc -5'
5111 3' -62.8 NC_001798.1 + 79179 0.68 0.500486
Target:  5'- aCCGccCUGUGCGCCcGGCugCGGGAUGa -3'
miRNA:   3'- -GGUccGGCACGCGGaCCG--GCCCUACc -5'
5111 3' -62.8 NC_001798.1 + 85265 0.71 0.373637
Target:  5'- gCgGGGCCGcGCGCgaGGCuuCGGGggGGc -3'
miRNA:   3'- -GgUCCGGCaCGCGgaCCG--GCCCuaCC- -5'
5111 3' -62.8 NC_001798.1 + 88022 0.74 0.236066
Target:  5'- cCCGGGg---GCGCUUGGCCGGGGaGGg -3'
miRNA:   3'- -GGUCCggcaCGCGGACCGGCCCUaCC- -5'
5111 3' -62.8 NC_001798.1 + 89185 0.7 0.421781
Target:  5'- aCAGGuuGUGgGCCUGgaugauGCUGGGGUa- -3'
miRNA:   3'- gGUCCggCACgCGGAC------CGGCCCUAcc -5'
5111 3' -62.8 NC_001798.1 + 92706 0.7 0.408579
Target:  5'- -gAGGCCGUGUgcaucaGCaacaccuuccugcauCUGGgCGGGAUGGa -3'
miRNA:   3'- ggUCCGGCACG------CG---------------GACCgGCCCUACC- -5'
5111 3' -62.8 NC_001798.1 + 93125 0.72 0.30872
Target:  5'- gCGGGCgGguuugagcaGCGCCUGGCCucGGuGAUGGc -3'
miRNA:   3'- gGUCCGgCa--------CGCGGACCGG--CC-CUACC- -5'
5111 3' -62.8 NC_001798.1 + 93983 0.69 0.438639
Target:  5'- aCCAGGCgGUGC-CCacGGCCcugGGGAggcUGGa -3'
miRNA:   3'- -GGUCCGgCACGcGGa-CCGG---CCCU---ACC- -5'
5111 3' -62.8 NC_001798.1 + 96335 0.67 0.594631
Target:  5'- uCCAGGUgcgCGUGCugcggcggcaCCUgcGGCCGGGGcUGGa -3'
miRNA:   3'- -GGUCCG---GCACGc---------GGA--CCGGCCCU-ACC- -5'
5111 3' -62.8 NC_001798.1 + 97476 0.66 0.662268
Target:  5'- -gGGGCCGgcggcGCGaCCgggggGGCCGaGGA-GGa -3'
miRNA:   3'- ggUCCGGCa----CGC-GGa----CCGGC-CCUaCC- -5'
5111 3' -62.8 NC_001798.1 + 101803 0.67 0.565884
Target:  5'- uCCGcGCCGgGCGCCUcgGGuuGGGGUa- -3'
miRNA:   3'- -GGUcCGGCaCGCGGA--CCggCCCUAcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.