Results 41 - 60 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5111 | 3' | -62.8 | NC_001798.1 | + | 97476 | 0.66 | 0.662268 |
Target: 5'- -gGGGCCGgcggcGCGaCCgggggGGCCGaGGA-GGa -3' miRNA: 3'- ggUCCGGCa----CGC-GGa----CCGGC-CCUaCC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 96335 | 0.67 | 0.594631 |
Target: 5'- uCCAGGUgcgCGUGCugcggcggcaCCUgcGGCCGGGGcUGGa -3' miRNA: 3'- -GGUCCG---GCACGc---------GGA--CCGGCCCU-ACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 93983 | 0.69 | 0.438639 |
Target: 5'- aCCAGGCgGUGC-CCacGGCCcugGGGAggcUGGa -3' miRNA: 3'- -GGUCCGgCACGcGGa-CCGG---CCCU---ACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 93125 | 0.72 | 0.30872 |
Target: 5'- gCGGGCgGguuugagcaGCGCCUGGCCucGGuGAUGGc -3' miRNA: 3'- gGUCCGgCa--------CGCGGACCGG--CC-CUACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 92706 | 0.7 | 0.408579 |
Target: 5'- -gAGGCCGUGUgcaucaGCaacaccuuccugcauCUGGgCGGGAUGGa -3' miRNA: 3'- ggUCCGGCACG------CG---------------GACCgGCCCUACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 89185 | 0.7 | 0.421781 |
Target: 5'- aCAGGuuGUGgGCCUGgaugauGCUGGGGUa- -3' miRNA: 3'- gGUCCggCACgCGGAC------CGGCCCUAcc -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 88022 | 0.74 | 0.236066 |
Target: 5'- cCCGGGg---GCGCUUGGCCGGGGaGGg -3' miRNA: 3'- -GGUCCggcaCGCGGACCGGCCCUaCC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 85265 | 0.71 | 0.373637 |
Target: 5'- gCgGGGCCGcGCGCgaGGCuuCGGGggGGc -3' miRNA: 3'- -GgUCCGGCaCGCGgaCCG--GCCCuaCC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 79179 | 0.68 | 0.500486 |
Target: 5'- aCCGccCUGUGCGCCcGGCugCGGGAUGa -3' miRNA: 3'- -GGUccGGCACGCGGaCCG--GCCCUACc -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 78122 | 0.67 | 0.60427 |
Target: 5'- aCgAGGCCGUgggGCGCCUGGC--GGAc-- -3' miRNA: 3'- -GgUCCGGCA---CGCGGACCGgcCCUacc -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 77436 | 0.73 | 0.289081 |
Target: 5'- gCCGGGCC-UGCGCCcaGCCGGaGggGGa -3' miRNA: 3'- -GGUCCGGcACGCGGacCGGCC-CuaCC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 76864 | 0.66 | 0.640046 |
Target: 5'- uCC-GGCCGUGCuggcgacccugcggGCCUcccuGCCcgcGGGGUGGa -3' miRNA: 3'- -GGuCCGGCACG--------------CGGAc---CGG---CCCUACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 75434 | 0.66 | 0.633273 |
Target: 5'- aCgGGGCCcgcaCGCauacgcaGGCCGGGGUGGc -3' miRNA: 3'- -GgUCCGGcac-GCGga-----CCGGCCCUACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 72150 | 0.69 | 0.473472 |
Target: 5'- cCCGGGCCG-GCGUCgGGCCcacgaugcaGAUGGc -3' miRNA: 3'- -GGUCCGGCaCGCGGaCCGGcc-------CUACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 69134 | 0.67 | 0.563027 |
Target: 5'- cCCAGGCCucgGCcagucgcucggucuGCC-GGCCGGGcgGa -3' miRNA: 3'- -GGUCCGGca-CG--------------CGGaCCGGCCCuaCc -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 68729 | 0.78 | 0.140124 |
Target: 5'- uCCAGGUCcacgaagGCGCa-GGCCGGGAUGGu -3' miRNA: 3'- -GGUCCGGca-----CGCGgaCCGGCCCUACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 66833 | 0.77 | 0.162032 |
Target: 5'- cCCGGuGCCG-GCGCCcaGGCCGGGGUuuccGGg -3' miRNA: 3'- -GGUC-CGGCaCGCGGa-CCGGCCCUA----CC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 57159 | 0.68 | 0.518867 |
Target: 5'- gCGGGCUG-GCGCCcgGGCCGGc---- -3' miRNA: 3'- gGUCCGGCaCGCGGa-CCGGCCcuacc -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 56940 | 0.68 | 0.52909 |
Target: 5'- --cGGCCGUGCacgucgccuuaaacGgCUGGCCcuccagcaccgcgugGGGGUGGa -3' miRNA: 3'- gguCCGGCACG--------------CgGACCGG---------------CCCUACC- -5' |
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5111 | 3' | -62.8 | NC_001798.1 | + | 53989 | 0.68 | 0.536572 |
Target: 5'- cCUGGGCCaccugacGCGCCUGGCCcaccuguGGGAgaccGGc -3' miRNA: 3'- -GGUCCGGca-----CGCGGACCGG-------CCCUa---CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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