miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5111 3' -62.8 NC_001798.1 + 135190 0.67 0.569699
Target:  5'- uCCAGGCCcaGCuCCUGGCCgcccucgcgggccucGGGGaGGc -3'
miRNA:   3'- -GGUCCGGcaCGcGGACCGG---------------CCCUaCC- -5'
5111 3' -62.8 NC_001798.1 + 134971 0.66 0.662268
Target:  5'- cCCAuGCCGcgugccuggGgGCCUGGCCcGcGGUGGg -3'
miRNA:   3'- -GGUcCGGCa--------CgCGGACCGGcC-CUACC- -5'
5111 3' -62.8 NC_001798.1 + 133288 0.74 0.227541
Target:  5'- aCCAuGGCCGcGUGCCugcagugggacucgaUGGCCGGGGggucgGGg -3'
miRNA:   3'- -GGU-CCGGCaCGCGG---------------ACCGGCCCUa----CC- -5'
5111 3' -62.8 NC_001798.1 + 133013 0.7 0.430162
Target:  5'- aCCuccGGCCGgacgucGCGCC-GGCCGaGGUGGu -3'
miRNA:   3'- -GGu--CCGGCa-----CGCGGaCCGGCcCUACC- -5'
5111 3' -62.8 NC_001798.1 + 132207 0.66 0.613927
Target:  5'- -gGGaGCUGgaggcGCGCCUGGCCGGcGGa-- -3'
miRNA:   3'- ggUC-CGGCa----CGCGGACCGGCC-CUacc -5'
5111 3' -62.8 NC_001798.1 + 132130 0.7 0.389267
Target:  5'- gCAGGCgGcccUGCGCCgccgggGGCCGGcGGgcgGGg -3'
miRNA:   3'- gGUCCGgC---ACGCGGa-----CCGGCC-CUa--CC- -5'
5111 3' -62.8 NC_001798.1 + 130513 0.66 0.652615
Target:  5'- gCCAGGCCGacgaUGCCggUGGC-GGcGAUGGc -3'
miRNA:   3'- -GGUCCGGCac--GCGG--ACCGgCC-CUACC- -5'
5111 3' -62.8 NC_001798.1 + 123920 0.69 0.447212
Target:  5'- uCCGGGgCGUGCuguGCCcugGGuCCGGGGgccUGGu -3'
miRNA:   3'- -GGUCCgGCACG---CGGa--CC-GGCCCU---ACC- -5'
5111 3' -62.8 NC_001798.1 + 122212 0.66 0.662268
Target:  5'- gCuGGUCGaGUGgCUGGaCCGcGGGUGGg -3'
miRNA:   3'- gGuCCGGCaCGCgGACC-GGC-CCUACC- -5'
5111 3' -62.8 NC_001798.1 + 121534 0.69 0.438639
Target:  5'- aCAcGGUCGcggcgcUGCGCCUGGCgUGGGGcccgUGGg -3'
miRNA:   3'- gGU-CCGGC------ACGCGGACCG-GCCCU----ACC- -5'
5111 3' -62.8 NC_001798.1 + 120222 0.71 0.351004
Target:  5'- cCCGGGCCGUuggccccCGCCgaGGCCaGGAUGcGg -3'
miRNA:   3'- -GGUCCGGCAc------GCGGa-CCGGcCCUAC-C- -5'
5111 3' -62.8 NC_001798.1 + 118924 0.66 0.652615
Target:  5'- gCCAGGCgacggaCGUGCGCCUGGaguCGcuGGAc-- -3'
miRNA:   3'- -GGUCCG------GCACGCGGACCg--GC--CCUacc -5'
5111 3' -62.8 NC_001798.1 + 115581 0.69 0.472584
Target:  5'- gCCuGGCgGcaGCGCCUcgcccacGGCCGGGuccgGUGGg -3'
miRNA:   3'- -GGuCCGgCa-CGCGGA-------CCGGCCC----UACC- -5'
5111 3' -62.8 NC_001798.1 + 115029 0.68 0.491403
Target:  5'- -aAGGCCGUGCggaGCCUGGaCGacGUGGg -3'
miRNA:   3'- ggUCCGGCACG---CGGACCgGCccUACC- -5'
5111 3' -62.8 NC_001798.1 + 113128 0.66 0.642947
Target:  5'- aCgAGGCC--GCGUgUGGCgGGGA-GGa -3'
miRNA:   3'- -GgUCCGGcaCGCGgACCGgCCCUaCC- -5'
5111 3' -62.8 NC_001798.1 + 111897 0.66 0.659374
Target:  5'- gCCGGGggagGUGCGCCUGGgCCagggcgaauacguaGGGGgagGGg -3'
miRNA:   3'- -GGUCCgg--CACGCGGACC-GG--------------CCCUa--CC- -5'
5111 3' -62.8 NC_001798.1 + 110295 0.68 0.500486
Target:  5'- -gGGGCCGUguuucuGCGCUacaccccGGCCGGGGaGGu -3'
miRNA:   3'- ggUCCGGCA------CGCGGa------CCGGCCCUaCC- -5'
5111 3' -62.8 NC_001798.1 + 108832 0.67 0.585016
Target:  5'- aCguGGCCcguggGCGUCUGGacgaCGGGcgGGc -3'
miRNA:   3'- -GguCCGGca---CGCGGACCg---GCCCuaCC- -5'
5111 3' -62.8 NC_001798.1 + 107642 0.66 0.642947
Target:  5'- gUCGGGUgucgagacgcccUGuUGCGCCUcaccGCCGGGAUGa -3'
miRNA:   3'- -GGUCCG------------GC-ACGCGGAc---CGGCCCUACc -5'
5111 3' -62.8 NC_001798.1 + 101803 0.67 0.565884
Target:  5'- uCCGcGCCGgGCGCCUcgGGuuGGGGUa- -3'
miRNA:   3'- -GGUcCGGCaCGCGGA--CCggCCCUAcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.