miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5111 3' -62.8 NC_001798.1 + 154289 0.68 0.517942
Target:  5'- cCCGGGCCGUGuUGCg-GGCCcucuuaaGGGgcGGc -3'
miRNA:   3'- -GGUCCGGCAC-GCGgaCCGG-------CCCuaCC- -5'
5111 3' -62.8 NC_001798.1 + 154179 0.66 0.662268
Target:  5'- cCCGGaGCCGgagcGCGUCgGGgCGGGAg-- -3'
miRNA:   3'- -GGUC-CGGCa---CGCGGaCCgGCCCUacc -5'
5111 3' -62.8 NC_001798.1 + 152500 0.67 0.575432
Target:  5'- cCCAauaGCCGcGCGCCccGGCgGGGgcGGa -3'
miRNA:   3'- -GGUc--CGGCaCGCGGa-CCGgCCCuaCC- -5'
5111 3' -62.8 NC_001798.1 + 152275 0.71 0.343679
Target:  5'- gCCGGGCCGggGUuCCaUGaGCCGGGGUaGGg -3'
miRNA:   3'- -GGUCCGGCa-CGcGG-AC-CGGCCCUA-CC- -5'
5111 3' -62.8 NC_001798.1 + 151610 0.72 0.315489
Target:  5'- --cGGCCGgGgGCCgGGCCGGGGgcgUGGc -3'
miRNA:   3'- gguCCGGCaCgCGGaCCGGCCCU---ACC- -5'
5111 3' -62.8 NC_001798.1 + 151261 0.66 0.658409
Target:  5'- uCCAcGGCCGUGCcggcccgcacggccGCCUcGGCCuccacgcGGGuccgGGg -3'
miRNA:   3'- -GGU-CCGGCACG--------------CGGA-CCGG-------CCCua--CC- -5'
5111 3' -62.8 NC_001798.1 + 151138 0.68 0.509642
Target:  5'- gCCAGGUcaucguccucguCGUccGUGCCgGGCCacgggGGGGUGGg -3'
miRNA:   3'- -GGUCCG------------GCA--CGCGGaCCGG-----CCCUACC- -5'
5111 3' -62.8 NC_001798.1 + 149656 0.68 0.518867
Target:  5'- -gAGGCCGgGCGCCgGGUCGcGGGccccGGg -3'
miRNA:   3'- ggUCCGGCaCGCGGaCCGGC-CCUa---CC- -5'
5111 3' -62.8 NC_001798.1 + 149150 0.66 0.633273
Target:  5'- cCCcuGCCcccgagGCGCCUcGGCCGGugguccGGUGGg -3'
miRNA:   3'- -GGucCGGca----CGCGGA-CCGGCC------CUACC- -5'
5111 3' -62.8 NC_001798.1 + 148409 0.78 0.136747
Target:  5'- gCGGGCgGgguggGCGCCggGGCgGGGGUGGg -3'
miRNA:   3'- gGUCCGgCa----CGCGGa-CCGgCCCUACC- -5'
5111 3' -62.8 NC_001798.1 + 148290 0.68 0.491403
Target:  5'- gCGGGCagGUGUGC--GGgCGGGGUGGg -3'
miRNA:   3'- gGUCCGg-CACGCGgaCCgGCCCUACC- -5'
5111 3' -62.8 NC_001798.1 + 148083 0.67 0.594631
Target:  5'- aCGGGCCGgGgGCCggGGCCgcuaGGGAa-- -3'
miRNA:   3'- gGUCCGGCaCgCGGa-CCGG----CCCUacc -5'
5111 3' -62.8 NC_001798.1 + 147024 0.67 0.556378
Target:  5'- gCGGGCCG-GgGCUUGGCCGccgaGGUGc -3'
miRNA:   3'- gGUCCGGCaCgCGGACCGGCc---CUACc -5'
5111 3' -62.8 NC_001798.1 + 146497 0.71 0.365984
Target:  5'- gCCGGGCCGgcaacgccccGCGCC-GGCCGcGGcgGa -3'
miRNA:   3'- -GGUCCGGCa---------CGCGGaCCGGC-CCuaCc -5'
5111 3' -62.8 NC_001798.1 + 146297 0.66 0.662268
Target:  5'- gCGGGgaGUGgGC--GGCCGGGcgGGa -3'
miRNA:   3'- gGUCCggCACgCGgaCCGGCCCuaCC- -5'
5111 3' -62.8 NC_001798.1 + 145820 0.71 0.343679
Target:  5'- gCGGGCgCG-GCGgC-GGUCGGGGUGGg -3'
miRNA:   3'- gGUCCG-GCaCGCgGaCCGGCCCUACC- -5'
5111 3' -62.8 NC_001798.1 + 144061 1.1 0.000669
Target:  5'- gCCAGGCCGUGCGCCUGGCCGGGAUGGu -3'
miRNA:   3'- -GGUCCGGCACGCGGACCGGCCCUACC- -5'
5111 3' -62.8 NC_001798.1 + 138559 0.66 0.642947
Target:  5'- aCCAGGCgGU-CGCC-GGUCcacaGGGggGGg -3'
miRNA:   3'- -GGUCCGgCAcGCGGaCCGG----CCCuaCC- -5'
5111 3' -62.8 NC_001798.1 + 135797 0.7 0.389267
Target:  5'- -gAGGCCGUGUGCgC-GGCcCGGGGcgucaUGGa -3'
miRNA:   3'- ggUCCGGCACGCG-GaCCG-GCCCU-----ACC- -5'
5111 3' -62.8 NC_001798.1 + 135313 0.71 0.351004
Target:  5'- cCCGGGCCGUgcuggaGCGCCUGguGCCGGa---- -3'
miRNA:   3'- -GGUCCGGCA------CGCGGAC--CGGCCcuacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.