miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5111 3' -62.8 NC_001798.1 + 2239 0.66 0.621663
Target:  5'- gCGGGCCGaaggcggcgggcGCGCC--GCCGGGGggcgGGg -3'
miRNA:   3'- gGUCCGGCa-----------CGCGGacCGGCCCUa---CC- -5'
5111 3' -62.8 NC_001798.1 + 2325 0.69 0.482398
Target:  5'- -aGGGCCGgGCGCCacGGCgCGGGGaagagcgggUGGu -3'
miRNA:   3'- ggUCCGGCaCGCGGa-CCG-GCCCU---------ACC- -5'
5111 3' -62.8 NC_001798.1 + 2614 0.74 0.246535
Target:  5'- gCGGGgcgccgcCCGgcgGCGcCCUGGCCGGGgcGGg -3'
miRNA:   3'- gGUCC-------GGCa--CGC-GGACCGGCCCuaCC- -5'
5111 3' -62.8 NC_001798.1 + 3005 0.69 0.482398
Target:  5'- cCCGGGCgCGgggGCGCggcgGGCCGGGcuccGGc -3'
miRNA:   3'- -GGUCCG-GCa--CGCGga--CCGGCCCua--CC- -5'
5111 3' -62.8 NC_001798.1 + 3810 0.66 0.662268
Target:  5'- aCCGGGCCcgcgccuccuccGccucggGCGCCccccagaGGCCGGGgcGGc -3'
miRNA:   3'- -GGUCCGG------------Ca-----CGCGGa------CCGGCCCuaCC- -5'
5111 3' -62.8 NC_001798.1 + 4094 0.69 0.464631
Target:  5'- uCCGGGCCGgggcGgGCUcGGCCcuGGGcgGGc -3'
miRNA:   3'- -GGUCCGGCa---CgCGGaCCGG--CCCuaCC- -5'
5111 3' -62.8 NC_001798.1 + 4352 0.66 0.633273
Target:  5'- --cGGCCGaGCGCC-GGCgGGGGg-- -3'
miRNA:   3'- gguCCGGCaCGCGGaCCGgCCCUacc -5'
5111 3' -62.8 NC_001798.1 + 4836 0.73 0.263846
Target:  5'- cCCGGGCCGcGCGgCggGGCgacgguccggguuCGGGGUGGg -3'
miRNA:   3'- -GGUCCGGCaCGCgGa-CCG-------------GCCCUACC- -5'
5111 3' -62.8 NC_001798.1 + 6265 0.7 0.430162
Target:  5'- aCGGGCCGgggggacGgGCCggggggacgGGCCGGGG-GGa -3'
miRNA:   3'- gGUCCGGCa------CgCGGa--------CCGGCCCUaCC- -5'
5111 3' -62.8 NC_001798.1 + 6304 0.7 0.430162
Target:  5'- aCGGGCCGgggggacGgGCCggggggacgGGCCGGGG-GGa -3'
miRNA:   3'- gGUCCGGCa------CgCGGa--------CCGGCCCUaCC- -5'
5111 3' -62.8 NC_001798.1 + 6343 0.66 0.642947
Target:  5'- aCGGGCCGggGgGaCgGGCCGGGG-GGn -3'
miRNA:   3'- gGUCCGGCa-CgCgGaCCGGCCCUaCC- -5'
5111 3' -62.8 NC_001798.1 + 6369 0.78 0.140124
Target:  5'- aCGGGCCGggGgGCCggggGGCCGGGGggccgGGg -3'
miRNA:   3'- gGUCCGGCa-CgCGGa---CCGGCCCUa----CC- -5'
5111 3' -62.8 NC_001798.1 + 6672 0.7 0.404506
Target:  5'- gCAGGCCGgGCGCCgccuucgUGGaCGGGAcaccaugucuUGGg -3'
miRNA:   3'- gGUCCGGCaCGCGG-------ACCgGCCCU----------ACC- -5'
5111 3' -62.8 NC_001798.1 + 9150 0.68 0.518867
Target:  5'- gCGGGCgCG-GCGCCgcccGcGCCGGGGggcaGGg -3'
miRNA:   3'- gGUCCG-GCaCGCGGa---C-CGGCCCUa---CC- -5'
5111 3' -62.8 NC_001798.1 + 9659 0.79 0.106883
Target:  5'- gCGGGCCGcGCGCggagGGCgCGGGAUGGg -3'
miRNA:   3'- gGUCCGGCaCGCGga--CCG-GCCCUACC- -5'
5111 3' -62.8 NC_001798.1 + 12308 0.67 0.565884
Target:  5'- gCCAGGCCcUGCagcgagcgGCCgGGCauacCGGGAUcGGa -3'
miRNA:   3'- -GGUCCGGcACG--------CGGaCCG----GCCCUA-CC- -5'
5111 3' -62.8 NC_001798.1 + 15268 0.67 0.60427
Target:  5'- aCGGGCgGUGCcCCgGGuuCCGGGcGUGGc -3'
miRNA:   3'- gGUCCGgCACGcGGaCC--GGCCC-UACC- -5'
5111 3' -62.8 NC_001798.1 + 19727 0.69 0.455877
Target:  5'- aCCGGGCUGggggucccGCGCUcaUGGCCGGaGAaaugugUGGc -3'
miRNA:   3'- -GGUCCGGCa-------CGCGG--ACCGGCC-CU------ACC- -5'
5111 3' -62.8 NC_001798.1 + 20346 0.69 0.473472
Target:  5'- gCAGGCgGUugGCGCU--GCCGGGcgGGu -3'
miRNA:   3'- gGUCCGgCA--CGCGGacCGGCCCuaCC- -5'
5111 3' -62.8 NC_001798.1 + 20481 0.77 0.150352
Target:  5'- gCCGGuGCgCGUGCGCgauccccggaagaCUGGCCGGGGccUGGg -3'
miRNA:   3'- -GGUC-CG-GCACGCG-------------GACCGGCCCU--ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.